sync_1530 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_1530

Conserved hypothetical protein. (275 aa)

Predicted Functional Partners:

murF

0.773

glgA

0.718

sync_1528

0.554

menB

0.461

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
glgA	menB	sync_1529	sync_1527	Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.	Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA).	0.551
glgA	murF	sync_1529	sync_1531	Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.	0.751
glgA	sync_1528	sync_1529	sync_1528	Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.	Protein erfK/srfK precursor; Identified by match to protein family HMM PF03734.	0.595
glgA	sync_1530	sync_1529	sync_1530	Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.	Conserved hypothetical protein.	0.718
menB	glgA	sync_1527	sync_1529	Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA).	Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.	0.551
menB	murF	sync_1527	sync_1531	Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA).	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.	0.524
menB	sync_1528	sync_1527	sync_1528	Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA).	Protein erfK/srfK precursor; Identified by match to protein family HMM PF03734.	0.633
menB	sync_1530	sync_1527	sync_1530	Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA).	Conserved hypothetical protein.	0.461
murF	glgA	sync_1531	sync_1529	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.	Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.	0.751
murF	menB	sync_1531	sync_1527	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.	Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA).	0.524
murF	sync_1528	sync_1531	sync_1528	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.	Protein erfK/srfK precursor; Identified by match to protein family HMM PF03734.	0.572
murF	sync_1530	sync_1531	sync_1530	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.	Conserved hypothetical protein.	0.773
sync_1528	glgA	sync_1528	sync_1529	Protein erfK/srfK precursor; Identified by match to protein family HMM PF03734.	Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.	0.595
sync_1528	menB	sync_1528	sync_1527	Protein erfK/srfK precursor; Identified by match to protein family HMM PF03734.	Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA).	0.633
sync_1528	murF	sync_1528	sync_1531	Protein erfK/srfK precursor; Identified by match to protein family HMM PF03734.	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.	0.572
sync_1528	sync_1530	sync_1528	sync_1530	Protein erfK/srfK precursor; Identified by match to protein family HMM PF03734.	Conserved hypothetical protein.	0.554
sync_1530	glgA	sync_1530	sync_1529	Conserved hypothetical protein.	Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.	0.718
sync_1530	menB	sync_1530	sync_1527	Conserved hypothetical protein.	Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA).	0.461
sync_1530	murF	sync_1530	sync_1531	Conserved hypothetical protein.	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.	0.773
sync_1530	sync_1528	sync_1530	sync_1528	Conserved hypothetical protein.	Protein erfK/srfK precursor; Identified by match to protein family HMM PF03734.	0.554