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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1542Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family. (615 aa)    
Predicted Functional Partners:
sync_0315
Uncharacterized conserved membrane protein.
  
     0.772
sync_0314
Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
     0.771
sync_1289
Putative membrane protein, YjgP/YjgQ family protein; Identified by match to protein family HMM PF03739.
  
     0.741
sync_2215
Membrane protein, OMP85 family protein; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.
  
   
 0.741
sync_0732
Conserved hypothetical protein.
  
    0.713
sync_1365
Conserved hypothetical protein; Identified by similarity to GB:CAE20894.1.
  
     0.708
sync_0473
Conserved hypothetical protein.
  
     0.703
sync_1041
Putative RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
   
 0.688
sync_2717
Possible general (type II) secretion pathway protein D precursor; Identified by match to protein family HMM PF00263; match to protein family HMM PF07660; Belongs to the bacterial secretin family.
  
     0.677
sync_2541
Possible RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
   
 0.672
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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