Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
sync_1545ABC-type Fe3+ transport system periplasmic component; Identified by match to protein family HMM PF01547. (334 aa)    
Predicted Functional Partners:
sync_2048
ABC-type Fe3+ transport system permease component; Identified by match to protein family HMM PF00528.
 
 
 0.993
sync_1942
ABC transporter, ATP binding component, possibly iron transporter; Identified by match to protein family HMM PF00005.
 
 
 0.970
sync_0267
Possible transporter, MFS family protein; Identified by match to protein family HMM PF07690.
  
  
 0.724
piuC
2OG-Fe(II) oxygenase superfamily enzyme; Identified by match to protein family HMM PF03171.
  
    0.631
sync_1503
Thiol oxidoreductase; Identified by match to protein family HMM PF06537.
 
    0.539
sync_1543
Possible Peptidase family M20/M25/M40.
       0.441
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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