Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| amiC | comB | sync_1549 | sync_1547 | Cell wall hydrolase/autolysin; Identified by match to protein family HMM PF01520. | 2-phosphosulfolactate phosphatase; Identified by match to protein family HMM PF04029; match to protein family HMM TIGR00298; Belongs to the ComB family. | 0.665 |
| amiC | murI | sync_1549 | sync_1550 | Cell wall hydrolase/autolysin; Identified by match to protein family HMM PF01520. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.845 |
| amiC | sync_1548 | sync_1549 | sync_1548 | Cell wall hydrolase/autolysin; Identified by match to protein family HMM PF01520. | Possible nitrilase; Identified by match to protein family HMM PF00795. | 0.801 |
| amiC | sync_1551 | sync_1549 | sync_1551 | Cell wall hydrolase/autolysin; Identified by match to protein family HMM PF01520. | Solanesyl diphosphate synthase; Identified by match to protein family HMM PF00348; match to protein family HMM TIGR02749; Belongs to the FPP/GGPP synthase family. | 0.690 |
| amiC | ubiD | sync_1549 | sync_1546 | Cell wall hydrolase/autolysin; Identified by match to protein family HMM PF01520. | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Identified by similarity to SP:P26615; match to protein family HMM PF01977; match to protein family HMM TIGR00148; Belongs to the UbiD family. | 0.491 |
| comB | amiC | sync_1547 | sync_1549 | 2-phosphosulfolactate phosphatase; Identified by match to protein family HMM PF04029; match to protein family HMM TIGR00298; Belongs to the ComB family. | Cell wall hydrolase/autolysin; Identified by match to protein family HMM PF01520. | 0.665 |
| comB | murI | sync_1547 | sync_1550 | 2-phosphosulfolactate phosphatase; Identified by match to protein family HMM PF04029; match to protein family HMM TIGR00298; Belongs to the ComB family. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.665 |
| comB | sync_1548 | sync_1547 | sync_1548 | 2-phosphosulfolactate phosphatase; Identified by match to protein family HMM PF04029; match to protein family HMM TIGR00298; Belongs to the ComB family. | Possible nitrilase; Identified by match to protein family HMM PF00795. | 0.665 |
| comB | sync_1551 | sync_1547 | sync_1551 | 2-phosphosulfolactate phosphatase; Identified by match to protein family HMM PF04029; match to protein family HMM TIGR00298; Belongs to the ComB family. | Solanesyl diphosphate synthase; Identified by match to protein family HMM PF00348; match to protein family HMM TIGR02749; Belongs to the FPP/GGPP synthase family. | 0.581 |
| comB | ubiD | sync_1547 | sync_1546 | 2-phosphosulfolactate phosphatase; Identified by match to protein family HMM PF04029; match to protein family HMM TIGR00298; Belongs to the ComB family. | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Identified by similarity to SP:P26615; match to protein family HMM PF01977; match to protein family HMM TIGR00148; Belongs to the UbiD family. | 0.582 |
| murI | amiC | sync_1550 | sync_1549 | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | Cell wall hydrolase/autolysin; Identified by match to protein family HMM PF01520. | 0.845 |
| murI | comB | sync_1550 | sync_1547 | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 2-phosphosulfolactate phosphatase; Identified by match to protein family HMM PF04029; match to protein family HMM TIGR00298; Belongs to the ComB family. | 0.665 |
| murI | sync_1548 | sync_1550 | sync_1548 | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | Possible nitrilase; Identified by match to protein family HMM PF00795. | 0.811 |
| murI | sync_1551 | sync_1550 | sync_1551 | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | Solanesyl diphosphate synthase; Identified by match to protein family HMM PF00348; match to protein family HMM TIGR02749; Belongs to the FPP/GGPP synthase family. | 0.733 |
| murI | ubiD | sync_1550 | sync_1546 | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Identified by similarity to SP:P26615; match to protein family HMM PF01977; match to protein family HMM TIGR00148; Belongs to the UbiD family. | 0.519 |
| sync_1224 | ubiA | sync_1224 | sync_2142 | Putative 2-octaprenyl-6-methoxyphenol hydroxylase; Identified by match to protein family HMM PF01494. | 4-hydroxybenzoate polyprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of plastoquinone-9 (PQ-9) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 4-hydroxy-3-solanesylbenzoate. Belongs to the UbiA prenyltransferase family. | 0.726 |
| sync_1224 | ubiD | sync_1224 | sync_1546 | Putative 2-octaprenyl-6-methoxyphenol hydroxylase; Identified by match to protein family HMM PF01494. | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Identified by similarity to SP:P26615; match to protein family HMM PF01977; match to protein family HMM TIGR00148; Belongs to the UbiD family. | 0.533 |
| sync_1548 | amiC | sync_1548 | sync_1549 | Possible nitrilase; Identified by match to protein family HMM PF00795. | Cell wall hydrolase/autolysin; Identified by match to protein family HMM PF01520. | 0.801 |
| sync_1548 | comB | sync_1548 | sync_1547 | Possible nitrilase; Identified by match to protein family HMM PF00795. | 2-phosphosulfolactate phosphatase; Identified by match to protein family HMM PF04029; match to protein family HMM TIGR00298; Belongs to the ComB family. | 0.665 |
| sync_1548 | murI | sync_1548 | sync_1550 | Possible nitrilase; Identified by match to protein family HMM PF00795. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.811 |
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