STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bcp-1Bacterioferritin comigratory protein; Identified by match to protein family HMM PF00578. (152 aa)    
Predicted Functional Partners:
sync_1555
Conserved hypothetical protein; Identified by similarity to GB:CAE20563.1; match to protein family HMM PF07082.
       0.811
sync_1554
Hypothetical protein; Identified by Glimmer2; putative.
       0.697
sync_1557
Possible DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929.
       0.566
trmD
tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
      
 0.508
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
   
   0.487
sync_1597
Hypothetical protein; Identified by Glimmer2; putative.
   
   0.480
sync_2779
Flavoprotein; Identified by match to protein family HMM PF00753; match to protein family HMM PF01613.
     
 0.453
sync_1322
Thioredoxin peroxidase; Identified by match to protein family HMM PF00578.
  
 
 0.417
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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