sync_1571 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_1571

Urea transporter, putative; Identified by match to protein family HMM PF00036; match to protein family HMM PF03253. (531 aa)

Predicted Functional Partners:

sync_1570

0.773

sync_2389

0.750

sync_0216

0.541

glnA

0.530

sync_1572

0.491

sync_0269

0.481

ureG

0.479

ureE

0.474

ureF

0.473

ureC

0.447

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
glnA	sync_1570	sync_1569	sync_1570	Glutamine synthetase, type I; Identified by similarity to SP:P05457; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653.	Hypothetical protein; Identified by Glimmer2; putative; Belongs to the arginase family.	0.532
glnA	sync_1571	sync_1569	sync_1571	Glutamine synthetase, type I; Identified by similarity to SP:P05457; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653.	Urea transporter, putative; Identified by match to protein family HMM PF00036; match to protein family HMM PF03253.	0.530
glnA	sync_2389	sync_1569	sync_2389	Glutamine synthetase, type I; Identified by similarity to SP:P05457; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653.	Aspartoacylase; Identified by match to protein family HMM PF04952; Belongs to the AspA/AstE family. Aspartoacylase subfamily.	0.800
sync_0216	sync_1571	sync_0216	sync_1571	Heme oxygenase; Identified by match to protein family HMM PF01126.	Urea transporter, putative; Identified by match to protein family HMM PF00036; match to protein family HMM PF03253.	0.541
sync_0216	sync_2389	sync_0216	sync_2389	Heme oxygenase; Identified by match to protein family HMM PF01126.	Aspartoacylase; Identified by match to protein family HMM PF04952; Belongs to the AspA/AstE family. Aspartoacylase subfamily.	0.699
sync_0269	sync_1571	sync_0269	sync_1571	Putative sarcosine oxidase; Identified by match to protein family HMM PF01266.	Urea transporter, putative; Identified by match to protein family HMM PF00036; match to protein family HMM PF03253.	0.481
sync_1570	glnA	sync_1570	sync_1569	Hypothetical protein; Identified by Glimmer2; putative; Belongs to the arginase family.	Glutamine synthetase, type I; Identified by similarity to SP:P05457; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653.	0.532
sync_1570	sync_1571	sync_1570	sync_1571	Hypothetical protein; Identified by Glimmer2; putative; Belongs to the arginase family.	Urea transporter, putative; Identified by match to protein family HMM PF00036; match to protein family HMM PF03253.	0.773
sync_1570	sync_1572	sync_1570	sync_1572	Hypothetical protein; Identified by Glimmer2; putative; Belongs to the arginase family.	Hypothetical protein; Identified by Glimmer2; putative.	0.491
sync_1571	glnA	sync_1571	sync_1569	Urea transporter, putative; Identified by match to protein family HMM PF00036; match to protein family HMM PF03253.	Glutamine synthetase, type I; Identified by similarity to SP:P05457; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653.	0.530
sync_1571	sync_0216	sync_1571	sync_0216	Urea transporter, putative; Identified by match to protein family HMM PF00036; match to protein family HMM PF03253.	Heme oxygenase; Identified by match to protein family HMM PF01126.	0.541
sync_1571	sync_0269	sync_1571	sync_0269	Urea transporter, putative; Identified by match to protein family HMM PF00036; match to protein family HMM PF03253.	Putative sarcosine oxidase; Identified by match to protein family HMM PF01266.	0.481
sync_1571	sync_1570	sync_1571	sync_1570	Urea transporter, putative; Identified by match to protein family HMM PF00036; match to protein family HMM PF03253.	Hypothetical protein; Identified by Glimmer2; putative; Belongs to the arginase family.	0.773
sync_1571	sync_1572	sync_1571	sync_1572	Urea transporter, putative; Identified by match to protein family HMM PF00036; match to protein family HMM PF03253.	Hypothetical protein; Identified by Glimmer2; putative.	0.491
sync_1571	sync_2389	sync_1571	sync_2389	Urea transporter, putative; Identified by match to protein family HMM PF00036; match to protein family HMM PF03253.	Aspartoacylase; Identified by match to protein family HMM PF04952; Belongs to the AspA/AstE family. Aspartoacylase subfamily.	0.750
sync_1571	ureC	sync_1571	sync_2879	Urea transporter, putative; Identified by match to protein family HMM PF00036; match to protein family HMM PF03253.	Urease, alpha subunit; Identified by similarity to SP:P18314; match to protein family HMM PF00449; match to protein family HMM PF01979; match to protein family HMM TIGR01792; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.	0.447
sync_1571	ureE	sync_1571	sync_2875	Urea transporter, putative; Identified by match to protein family HMM PF00036; match to protein family HMM PF03253.	Urease accessory protein E; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.	0.474
sync_1571	ureF	sync_1571	sync_2874	Urea transporter, putative; Identified by match to protein family HMM PF00036; match to protein family HMM PF03253.	Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.	0.473
sync_1571	ureG	sync_1571	sync_2873	Urea transporter, putative; Identified by match to protein family HMM PF00036; match to protein family HMM PF03253.	Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.	0.479
sync_1572	sync_1570	sync_1572	sync_1570	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative; Belongs to the arginase family.	0.491