Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
sync_1571Urea transporter, putative; Identified by match to protein family HMM PF00036; match to protein family HMM PF03253. (531 aa)    
Predicted Functional Partners:
sync_1570
Hypothetical protein; Identified by Glimmer2; putative; Belongs to the arginase family.
     
 0.775
sync_2389
Aspartoacylase; Identified by match to protein family HMM PF04952; Belongs to the AspA/AstE family. Aspartoacylase subfamily.
  
     0.750
sync_0216
Heme oxygenase; Identified by match to protein family HMM PF01126.
  
     0.541
glnA
Glutamine synthetase, type I; Identified by similarity to SP:P05457; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653.
     
 0.516
sync_1572
Hypothetical protein; Identified by Glimmer2; putative.
       0.491
sync_0269
Putative sarcosine oxidase; Identified by match to protein family HMM PF01266.
  
     0.481
sync_1995
Conserved hypothetical protein TIGR00726; Identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; Belongs to the multicopper oxidase YfiH/RL5 family.
  
     0.409
ureE
Urease accessory protein E; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
     
 0.406
ureC
Urease, alpha subunit; Identified by similarity to SP:P18314; match to protein family HMM PF00449; match to protein family HMM PF01979; match to protein family HMM TIGR01792; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
     
 0.406
sync_1457
Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.
  
     0.404
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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