STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1581Identified by match to protein family HMM PF05419. (237 aa)    
Predicted Functional Partners:
psbW
Photosystem II reaction center protein PsbW; Identified by match to protein family HMM PF03912; match to protein family HMM TIGR03047; Belongs to the Psb28 family.
 
     0.879
sync_1407
Conserved hypothetical protein; Identified by similarity to GB:CAE20864.1.
  
     0.772
sync_2348
3Fe-4S ferredoxin.
  
     0.771
sync_1201
Conserved hypothetical protein; Identified by match to protein family HMM PF06799.
  
     0.770
sync_1555
Conserved hypothetical protein; Identified by similarity to GB:CAE20563.1; match to protein family HMM PF07082.
  
     0.770
sync_1408
Conserved hypothetical protein; Identified by similarity to GB:CAE07804.1.
  
     0.767
psaL
Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.
  
     0.760
sync_2028
Conserved hypothetical protein; Identified by similarity to GB:CAE08294.1.
  
     0.756
sync_2568
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
  
     0.756
psaE
Photosystem I reaction center subunit IV; Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase; Belongs to the PsaE family.
  
     0.753
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.