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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1582Predicted ATPase. (351 aa)    
Predicted Functional Partners:
sync_0230
Selenide,water dikinase; Identified by match to protein family HMM PF02769.
 
   
 0.863
psbW
Photosystem II reaction center protein PsbW; Identified by match to protein family HMM PF03912; match to protein family HMM TIGR03047; Belongs to the Psb28 family.
       0.715
sync_1584
Uncharacterized conserved membrane protein; Identified by match to protein family HMM PF01594.
       0.698
sync_1585
Domain of unknown function, putative; Identified by match to protein family HMM PF01594.
       0.691
sync_1581
Identified by match to protein family HMM PF05419.
       0.592
pmgA
pmgA protein; Identified by similarity to GB:BAA20429.1.
       0.475
sync_1536
Conserved hypothetical protein; Identified by similarity to GB:CAE07519.1; match to protein family HMM PF05430.
  
   
 0.465
phnD
ABC-type phosphate/phosphonate transport system periplasmic component; Identified by match to protein family HMM TIGR01098.
 
     0.431
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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