STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1597Hypothetical protein; Identified by Glimmer2; putative. (208 aa)    
Predicted Functional Partners:
sync_1598
Pentapeptide repeat protein; Identified by match to protein family HMM PF00805.
       0.664
sync_1599
Conserved hypothetical protein; Identified by similarity to GB:CAE20802.1.
       0.664
rlmH
Uncharacterized conserved protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.632
sync_1596
Uncharacterised protein family protein; Belongs to the UPF0102 family.
     
 0.576
holB
DNA polymerase III, delta' subunit; Identified by match to protein family HMM TIGR00678.
  
 
 0.492
sync_1400
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergens family protein; Identified by match to protein family HMM PF00578; match to protein family HMM TIGR01409.
   
   0.480
bcp-1
Bacterioferritin comigratory protein; Identified by match to protein family HMM PF00578.
   
   0.480
bcp-2
Bacterioferritin comigratory protein; Identified by similarity to SP:P23480; match to protein family HMM PF00578.
   
   0.480
sync_1601
Conserved hypothetical protein.
       0.442
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.