STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcyAPhycocyanobilin:ferredoxin oxidoreductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin. Belongs to the HY2 family. (245 aa)    
Predicted Functional Partners:
sync_0216
Heme oxygenase; Identified by match to protein family HMM PF01126.
 
  
 0.969
pebA
15,16-dihydrobiliverdin:ferredoxin oxidoreductase; Catalyzes the two-electron reduction of biliverdin IX-alpha at the C15 methine bridge; Belongs to the HY2 family.
     
 0.917
devC
ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185.
 
     0.838
cpcS-4
Conserved hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
   
 0.821
sync_1657
Possible ABC transporter component.
       0.800
sync_1659
ABC transporter, ATP-binding component; Identified by match to protein family HMM PF00005.
       0.800
sync_1432
Uncharacterized membrane protein.
  
     0.773
sync_2204
Uncharacterized protein.
  
     0.773
sync_2552
Conserved hypothetical protein; Identified by similarity to GB:CAE08712.1.
  
     0.772
sync_1387
Uncharacterized protein.
  
     0.769
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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