devC protein (Synechococcus sp. CC9311) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

devC

ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185. (390 aa)

Predicted Functional Partners:

sync_1657

0.969

sync_1659

0.958

pcyA

0.848

sync_1660

0.706

sync_2112

0.687

secE

0.641

ndhO

0.631

sync_2489

0.628

sync_2124

0.591

sync_1780

0.587

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
devC	ndhO	sync_1658	sync_2575	ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185.	Conserved hypothetical protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	0.631
devC	pcyA	sync_1658	sync_1656	ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185.	Phycocyanobilin:ferredoxin oxidoreductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin. Belongs to the HY2 family.	0.848
devC	secE	sync_1658	sync_2729	ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185.	Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.	0.641
devC	sync_1657	sync_1658	sync_1657	ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185.	Possible ABC transporter component.	0.969
devC	sync_1659	sync_1658	sync_1659	ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185.	ABC transporter, ATP-binding component; Identified by match to protein family HMM PF00005.	0.958
devC	sync_1660	sync_1658	sync_1660	ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185.	Conserved hypothetical protein; Identified by similarity to GB:CAE20761.1.	0.706
devC	sync_1780	sync_1658	sync_1780	ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185.	AbrB family transciptional regulator.	0.587
devC	sync_2112	sync_1658	sync_2112	ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.687
devC	sync_2124	sync_1658	sync_2124	ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185.	AbrB family transciptional regulator.	0.591
devC	sync_2489	sync_1658	sync_2489	ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185.	Uncharacterized conserved protein; Identified by match to protein family HMM PF07498.	0.628
ndhO	devC	sync_2575	sync_1658	Conserved hypothetical protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185.	0.631
ndhO	pcyA	sync_2575	sync_1656	Conserved hypothetical protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	Phycocyanobilin:ferredoxin oxidoreductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin. Belongs to the HY2 family.	0.734
ndhO	secE	sync_2575	sync_2729	Conserved hypothetical protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.	0.774
ndhO	sync_1780	sync_2575	sync_1780	Conserved hypothetical protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	AbrB family transciptional regulator.	0.774
ndhO	sync_2124	sync_2575	sync_2124	Conserved hypothetical protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	AbrB family transciptional regulator.	0.774
ndhO	sync_2489	sync_2575	sync_2489	Conserved hypothetical protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	Uncharacterized conserved protein; Identified by match to protein family HMM PF07498.	0.711
pcyA	devC	sync_1656	sync_1658	Phycocyanobilin:ferredoxin oxidoreductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin. Belongs to the HY2 family.	ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185.	0.848
pcyA	ndhO	sync_1656	sync_2575	Phycocyanobilin:ferredoxin oxidoreductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin. Belongs to the HY2 family.	Conserved hypothetical protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	0.734
pcyA	secE	sync_1656	sync_2729	Phycocyanobilin:ferredoxin oxidoreductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin. Belongs to the HY2 family.	Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.	0.666
pcyA	sync_1657	sync_1656	sync_1657	Phycocyanobilin:ferredoxin oxidoreductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin. Belongs to the HY2 family.	Possible ABC transporter component.	0.812