Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| devC | pcyA | sync_1658 | sync_1656 | ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185. | Phycocyanobilin:ferredoxin oxidoreductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin. Belongs to the HY2 family. | 0.838 |
| devC | sync_1657 | sync_1658 | sync_1657 | ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185. | Possible ABC transporter component. | 0.970 |
| devC | sync_1659 | sync_1658 | sync_1659 | ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185. | ABC transporter, ATP-binding component; Identified by match to protein family HMM PF00005. | 0.973 |
| devC | sync_1660 | sync_1658 | sync_1660 | ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185. | Conserved hypothetical protein; Identified by similarity to GB:CAE20761.1. | 0.687 |
| devC | sync_1661 | sync_1658 | sync_1661 | ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185. | Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535. | 0.513 |
| devC | sync_1662 | sync_1658 | sync_1662 | ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185. | Conserved hypothetical protein TIGR00046; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.446 |
| pcyA | devC | sync_1656 | sync_1658 | Phycocyanobilin:ferredoxin oxidoreductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin. Belongs to the HY2 family. | ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185. | 0.838 |
| pcyA | sync_1657 | sync_1656 | sync_1657 | Phycocyanobilin:ferredoxin oxidoreductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin. Belongs to the HY2 family. | Possible ABC transporter component. | 0.800 |
| pcyA | sync_1659 | sync_1656 | sync_1659 | Phycocyanobilin:ferredoxin oxidoreductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin. Belongs to the HY2 family. | ABC transporter, ATP-binding component; Identified by match to protein family HMM PF00005. | 0.800 |
| pcyA | sync_1660 | sync_1656 | sync_1660 | Phycocyanobilin:ferredoxin oxidoreductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin. Belongs to the HY2 family. | Conserved hypothetical protein; Identified by similarity to GB:CAE20761.1. | 0.687 |
| pcyA | sync_1661 | sync_1656 | sync_1661 | Phycocyanobilin:ferredoxin oxidoreductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin. Belongs to the HY2 family. | Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535. | 0.598 |
| pcyA | sync_1662 | sync_1656 | sync_1662 | Phycocyanobilin:ferredoxin oxidoreductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin. Belongs to the HY2 family. | Conserved hypothetical protein TIGR00046; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.445 |
| prmA | sync_1662 | sync_2255 | sync_1662 | Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. | Conserved hypothetical protein TIGR00046; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.552 |
| sync_1657 | devC | sync_1657 | sync_1658 | Possible ABC transporter component. | ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185. | 0.970 |
| sync_1657 | pcyA | sync_1657 | sync_1656 | Possible ABC transporter component. | Phycocyanobilin:ferredoxin oxidoreductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin. Belongs to the HY2 family. | 0.800 |
| sync_1657 | sync_1659 | sync_1657 | sync_1659 | Possible ABC transporter component. | ABC transporter, ATP-binding component; Identified by match to protein family HMM PF00005. | 0.914 |
| sync_1657 | sync_1660 | sync_1657 | sync_1660 | Possible ABC transporter component. | Conserved hypothetical protein; Identified by similarity to GB:CAE20761.1. | 0.687 |
| sync_1657 | sync_1661 | sync_1657 | sync_1661 | Possible ABC transporter component. | Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535. | 0.520 |
| sync_1657 | sync_1662 | sync_1657 | sync_1662 | Possible ABC transporter component. | Conserved hypothetical protein TIGR00046; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.449 |
| sync_1659 | devC | sync_1659 | sync_1658 | ABC transporter, ATP-binding component; Identified by match to protein family HMM PF00005. | ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185. | 0.973 |
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