STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1669Phosphonates transport; Identified by match to protein family HMM PF00005. (253 aa)    
Predicted Functional Partners:
phnC
ABC-type phosphate/phosphonate transport system permease component.
 
 
 0.996
phnD
ABC-type phosphate/phosphonate transport system periplasmic component; Identified by match to protein family HMM TIGR01098.
 
 
 0.994
sync_2819
ABC-type phosphate/phosphonate transport system, periplasmic component, putative.
  
 
 0.941
aspC
Aspartate aminotransferase; Identified by similarity to SP:Q56232; match to protein family HMM PF00155.
     
 0.635
sync_1498
Manganese/zinc/iron chelate ABC ransporter (MZT) family, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
     0.578
sync_1667
Arylesterase.
       0.548
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
     0.475
sync_1673
Uracil-DNA glycosylase; Identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758.
       0.463
ispG
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
       0.463
cysS
cysteinyl-tRNA synthetase; Identified by match to protein family HMM PF01406; match to protein family HMM TIGR00435; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.426
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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