Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
sync_1675C-terminal processing peptidase; Identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; Belongs to the peptidase S41A family. (450 aa)    
Predicted Functional Partners:
sync_1673
Uracil-DNA glycosylase; Identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758.
  
    0.777
ispG
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
       0.711
sync_1672
Lactoylglutathione lyase family enzyme, putative.
       0.600
sync_2090
Membrane-associated zinc metalloprotease, putative; Identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054.
 
  
 0.545
aspC
Aspartate aminotransferase; Identified by similarity to SP:Q56232; match to protein family HMM PF00155.
       0.528
sync_0963
Conserved hypothetical protein.
   
 
 0.481
sync_2914
Peptidase, S8A (subtilisin) family protein; Identified by match to protein family HMM PF00082; match to protein family HMM PF03160; Belongs to the peptidase S8 family.
   
 
 0.481
phnC
ABC-type phosphate/phosphonate transport system permease component.
       0.455
sync_1669
Phosphonates transport; Identified by match to protein family HMM PF00005.
       0.455
phnD
ABC-type phosphate/phosphonate transport system periplasmic component; Identified by match to protein family HMM TIGR01098.
       0.455
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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