STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1681Conserved hypothetical protein; Identified by similarity to GB:CAF30281.1; match to protein family HMM PF07053. (185 aa)    
Predicted Functional Partners:
sync_1680
Conserved hypothetical protein.
       0.671
sync_1979
Conserved hypothetical protein.
  
     0.528
sync_1682
Hypothetical protein; Identified by Glimmer2; putative.
       0.504
sync_1271
Cyanobacteria-specific chaperone containing dnaj domain fused to a membrane domain.
  
     0.484
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.484
sync_2041
Uncharacterized membrane protein.
  
     0.459
sync_1880
Uncharacterized conserved protein; Identified by match to protein family HMM PF04357.
  
     0.454
thf1
Uncharacterized protein; May be involved in photosynthetic membrane biogenesis.
  
     0.451
sync_0196
Conserved hypothetical protein; Identified by similarity to GB:CAE22124.1.
  
    0.448
sync_1019
Conserved hypothetical protein; Identified by similarity to GB:CAE07461.1.
  
     0.430
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.