STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1695Secreted pentapeptide repeats protein; Identified by match to protein family HMM PF00805. (172 aa)    
Predicted Functional Partners:
cobW
Cobalamin biosynthesis protein CobW; Identified by match to protein family HMM PF02492; match to protein family HMM PF07683; match to protein family HMM TIGR02475.
       0.812
sync_0305
Pentapeptide repeats; Identified by match to protein family HMM PF00805.
  
     0.764
sync_2716
Conserved hypothetical protein; Identified by match to protein family HMM PF00805.
  
     0.756
sync_0514
Identified by match to protein family HMM PF00805.
  
     0.752
upp
Uracil phosphoribosyltransferase.
  
    0.640
sync_1693
Uncharacterized membrane protein.
       0.597
ilvD
Dihydroxy-acid dehydratase; Identified by match to protein family HMM PF00920; match to protein family HMM TIGR00110; Belongs to the IlvD/Edd family.
     
 0.518
sync_2150
Conserved hypothetical protein.
  
     0.414
psbO
Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.
  
    0.410
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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