STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspOPrepilin peptidase; Identified by similarity to SP:P31712; match to protein family HMM PF01478; match to protein family HMM PF06750. (277 aa)    
Predicted Functional Partners:
pilB
Type IV pilus assembly protein PilB; Identified by match to protein family HMM PF00437.
 
 
 0.907
pilC
Type IV pilus assembly protein PilC; Identified by match to protein family HMM PF00482.
 
  
 0.904
sync_0667
Possible pilin; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
 
  
 0.860
pilT
Twitching motility protein; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420.
 
   
 0.820
sync_2158
Twitching mobility protein PilT; Identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420.
 
   
 0.813
accD
acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
       0.789
sync_1706
Conserved hypothetical protein.
       0.781
sync_1708
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
sync_1710
Conserved hypothetical protein; Identified by similarity to GB:BAD80348.1.
       0.773
sync_0539
Putative DNA protecting protein DprA; Identified by match to protein family HMM PF02481.
  
  
 0.771
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.