STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sync_1728ATP synthase; Identified by match to protein family HMM PF03734. (197 aa)    
Predicted Functional Partners:
sync_1729
Hypothetical protein; Identified by Glimmer2; putative.
       0.732
sync_1727
Hypothetical protein; Identified by Glimmer2; putative.
       0.572
sync_1364
D-alanyl-D-alanine carboxypeptidase; Identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666.
     
 0.514
sync_0051
Putative penicillin-binding protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717.
     
 0.507
cax
Calcium/proton exchanger; Ca(+)/H(+) antiporter that extrudes calcium in exchange for external protons.
  
    0.415
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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