Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| apcA | apcB-1 | sync_2323 | sync_1567 | Allophycocyanin, alpha subunit; Identified by match to protein family HMM PF00502. | Allophycocyanin, beta subunit; Identified by match to protein family HMM PF00502. | 0.999 |
| apcA | cytA-1 | sync_2323 | sync_1742 | Allophycocyanin, alpha subunit; Identified by match to protein family HMM PF00502. | Cytochrome c, class IC:Cytochrome c, class I; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | 0.529 |
| apcA | psbU | sync_2323 | sync_2545 | Allophycocyanin, alpha subunit; Identified by match to protein family HMM PF00502. | Photosystem II 12 kDa extrinsic protein PsbU; Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation. | 0.636 |
| apcA | psbV | sync_2323 | sync_2250 | Allophycocyanin, alpha subunit; Identified by match to protein family HMM PF00502. | Cytochrome c-550; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II. | 0.720 |
| apcB-1 | apcA | sync_1567 | sync_2323 | Allophycocyanin, beta subunit; Identified by match to protein family HMM PF00502. | Allophycocyanin, alpha subunit; Identified by match to protein family HMM PF00502. | 0.999 |
| apcB-1 | cytA-1 | sync_1567 | sync_1742 | Allophycocyanin, beta subunit; Identified by match to protein family HMM PF00502. | Cytochrome c, class IC:Cytochrome c, class I; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | 0.580 |
| apcB-1 | psaF | sync_1567 | sync_2155 | Allophycocyanin, beta subunit; Identified by match to protein family HMM PF00502. | Photosystem I reaction center subunit III; Identified by match to protein family HMM PF02507. | 0.410 |
| apcB-1 | psbU | sync_1567 | sync_2545 | Allophycocyanin, beta subunit; Identified by match to protein family HMM PF00502. | Photosystem II 12 kDa extrinsic protein PsbU; Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation. | 0.693 |
| apcB-1 | psbV | sync_1567 | sync_2250 | Allophycocyanin, beta subunit; Identified by match to protein family HMM PF00502. | Cytochrome c-550; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II. | 0.746 |
| cytA-1 | apcA | sync_1742 | sync_2323 | Cytochrome c, class IC:Cytochrome c, class I; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | Allophycocyanin, alpha subunit; Identified by match to protein family HMM PF00502. | 0.529 |
| cytA-1 | apcB-1 | sync_1742 | sync_1567 | Cytochrome c, class IC:Cytochrome c, class I; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | Allophycocyanin, beta subunit; Identified by match to protein family HMM PF00502. | 0.580 |
| cytA-1 | psaF | sync_1742 | sync_2155 | Cytochrome c, class IC:Cytochrome c, class I; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | Photosystem I reaction center subunit III; Identified by match to protein family HMM PF02507. | 0.606 |
| cytA-1 | psbU | sync_1742 | sync_2545 | Cytochrome c, class IC:Cytochrome c, class I; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | Photosystem II 12 kDa extrinsic protein PsbU; Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation. | 0.762 |
| cytA-1 | psbV | sync_1742 | sync_2250 | Cytochrome c, class IC:Cytochrome c, class I; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | Cytochrome c-550; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II. | 0.850 |
| cytA-1 | sync_0805 | sync_1742 | sync_0805 | Cytochrome c, class IC:Cytochrome c, class I; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | Zeta-carotene desaturase. | 0.606 |
| cytA-1 | sync_1408 | sync_1742 | sync_1408 | Cytochrome c, class IC:Cytochrome c, class I; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | Conserved hypothetical protein; Identified by similarity to GB:CAE07804.1. | 0.525 |
| cytA-1 | sync_1743 | sync_1742 | sync_1743 | Cytochrome c, class IC:Cytochrome c, class I; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | Putative lipoprotein. | 0.547 |
| cytA-1 | sync_2460 | sync_1742 | sync_2460 | Cytochrome c, class IC:Cytochrome c, class I; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | Conserved hypothetical protein; Identified by similarity to GB:CAE06850.1; match to protein family HMM PF02325. | 0.697 |
| cytA-1 | sync_2604 | sync_1742 | sync_2604 | Cytochrome c, class IC:Cytochrome c, class I; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | Predicted metal-binding cluster containing protein. | 0.680 |
| psaF | apcB-1 | sync_2155 | sync_1567 | Photosystem I reaction center subunit III; Identified by match to protein family HMM PF02507. | Allophycocyanin, beta subunit; Identified by match to protein family HMM PF00502. | 0.410 |
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