Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sync_1752Putative permease; Identified by match to protein family HMM PF03773. (319 aa)    
Predicted Functional Partners:
sync_1751
Conserved hypothetical protein.
 
  
 0.970
cytA-2
Cytochrome c, class IC:Cytochrome c, class I; Identified by match to protein family HMM PF00034.
       0.741
sync_1750
Conserved hypothetical protein.
  
    0.671
sync_1748
ABC transporter component, possibly Mn transport; Identified by match to protein family HMM PF00950.
       0.619
sync_1749
ABC transporter, ATP binding domain, possibly Mn transport; Identified by match to protein family HMM PF00005.
       0.619
ssaB
ABC transporter, substrate binding protein, possibly Mn; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.
       0.599
sync_1754
Putative membrane protein; Identified by similarity to GB:CAE20407.1.
       0.518
sync_1745
Possible tRNA synthetases class I.
       0.500
sync_1746
Conserved hypothetical protein.
       0.500
sync_1489
Multicopper oxidase; Identified by match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732.
  
  
 0.476
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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