cytA-2 protein (Synechococcus sp. CC9311) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

cytA-2

Cytochrome c, class IC:Cytochrome c, class I; Identified by match to protein family HMM PF00034. (113 aa)

Predicted Functional Partners:

psbV

0.802

psbU

0.773

sync_1751

0.772

sync_1752

0.741

sync_2460

0.736

sync_2604

0.714

sync_0805

0.694

psaF

0.692

sync_1408

0.645

sync_1432

0.619

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cytA-2	psaF	sync_1753	sync_2155	Cytochrome c, class IC:Cytochrome c, class I; Identified by match to protein family HMM PF00034.	Photosystem I reaction center subunit III; Identified by match to protein family HMM PF02507.	0.692
cytA-2	psbU	sync_1753	sync_2545	Cytochrome c, class IC:Cytochrome c, class I; Identified by match to protein family HMM PF00034.	Photosystem II 12 kDa extrinsic protein PsbU; Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation.	0.773
cytA-2	psbV	sync_1753	sync_2250	Cytochrome c, class IC:Cytochrome c, class I; Identified by match to protein family HMM PF00034.	Cytochrome c-550; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II.	0.802
cytA-2	sync_0805	sync_1753	sync_0805	Cytochrome c, class IC:Cytochrome c, class I; Identified by match to protein family HMM PF00034.	Zeta-carotene desaturase.	0.694
cytA-2	sync_1408	sync_1753	sync_1408	Cytochrome c, class IC:Cytochrome c, class I; Identified by match to protein family HMM PF00034.	Conserved hypothetical protein; Identified by similarity to GB:CAE07804.1.	0.645
cytA-2	sync_1432	sync_1753	sync_1432	Cytochrome c, class IC:Cytochrome c, class I; Identified by match to protein family HMM PF00034.	Uncharacterized membrane protein.	0.619
cytA-2	sync_1751	sync_1753	sync_1751	Cytochrome c, class IC:Cytochrome c, class I; Identified by match to protein family HMM PF00034.	Conserved hypothetical protein.	0.772
cytA-2	sync_1752	sync_1753	sync_1752	Cytochrome c, class IC:Cytochrome c, class I; Identified by match to protein family HMM PF00034.	Putative permease; Identified by match to protein family HMM PF03773.	0.741
cytA-2	sync_2460	sync_1753	sync_2460	Cytochrome c, class IC:Cytochrome c, class I; Identified by match to protein family HMM PF00034.	Conserved hypothetical protein; Identified by similarity to GB:CAE06850.1; match to protein family HMM PF02325.	0.736
cytA-2	sync_2604	sync_1753	sync_2604	Cytochrome c, class IC:Cytochrome c, class I; Identified by match to protein family HMM PF00034.	Predicted metal-binding cluster containing protein.	0.714
psaF	cytA-2	sync_2155	sync_1753	Photosystem I reaction center subunit III; Identified by match to protein family HMM PF02507.	Cytochrome c, class IC:Cytochrome c, class I; Identified by match to protein family HMM PF00034.	0.692
psaF	psbU	sync_2155	sync_2545	Photosystem I reaction center subunit III; Identified by match to protein family HMM PF02507.	Photosystem II 12 kDa extrinsic protein PsbU; Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation.	0.666
psaF	psbV	sync_2155	sync_2250	Photosystem I reaction center subunit III; Identified by match to protein family HMM PF02507.	Cytochrome c-550; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II.	0.597
psaF	sync_1408	sync_2155	sync_1408	Photosystem I reaction center subunit III; Identified by match to protein family HMM PF02507.	Conserved hypothetical protein; Identified by similarity to GB:CAE07804.1.	0.671
psaF	sync_1432	sync_2155	sync_1432	Photosystem I reaction center subunit III; Identified by match to protein family HMM PF02507.	Uncharacterized membrane protein.	0.760
psaF	sync_2460	sync_2155	sync_2460	Photosystem I reaction center subunit III; Identified by match to protein family HMM PF02507.	Conserved hypothetical protein; Identified by similarity to GB:CAE06850.1; match to protein family HMM PF02325.	0.745
psbU	cytA-2	sync_2545	sync_1753	Photosystem II 12 kDa extrinsic protein PsbU; Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation.	Cytochrome c, class IC:Cytochrome c, class I; Identified by match to protein family HMM PF00034.	0.773
psbU	psaF	sync_2545	sync_2155	Photosystem II 12 kDa extrinsic protein PsbU; Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation.	Photosystem I reaction center subunit III; Identified by match to protein family HMM PF02507.	0.666
psbU	psbV	sync_2545	sync_2250	Photosystem II 12 kDa extrinsic protein PsbU; Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation.	Cytochrome c-550; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II.	0.999
psbU	sync_0805	sync_2545	sync_0805	Photosystem II 12 kDa extrinsic protein PsbU; Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation.	Zeta-carotene desaturase.	0.429