STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1793Conserved hypothetical protein. (440 aa)    
Predicted Functional Partners:
sync_0215
Conserved hypothetical protein; Identified by similarity to GB:AAQ00795.1.
  
     0.646
sync_2015
Uncharacterized membrane protein.
  
     0.611
sync_1803
Carotenoid binding protein; Identified by match to protein family HMM PF02136; Belongs to the orange carotenoid-binding protein family.
  
     0.568
sync_0217
Conserved hypothetical protein.
 
    0.557
sync_1504
Conserved hypothetical protein.
  
     0.551
sync_2366
Possible ABC transporter, solute binding protein.
  
   
 0.550
sync_1268
SAM-dependent methyltransferase.
  
     0.543
sync_1176
Conserved hypothetical protein; Identified by match to protein family HMM PF01636.
  
     0.542
sync_0118
Conserved hypothetical protein.
  
     0.525
psbX
Photosystem II reaction centre X protein (PsbX); Involved in the binding and/or turnover of quinones at the Q(B) site of Photosystem II.
  
     0.512
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.