Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sync_1817Possible transcriptional regulator. (139 aa)    
Predicted Functional Partners:
sync_1557
Possible DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929.
  
     0.650
sync_2827
Possible Trypsin.
  
     0.615
sync_0937
Conserved hypothetical protein.
  
     0.589
sync_0936
Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690.
  
     0.560
sync_1818
Possible high light inducible protein-related protein.
       0.550
sync_0040
Conserved hypothetical protein.
  
     0.511
sync_0733
Uncharacterized secreted or membrane protein.
  
     0.511
sync_1540
Bacterial regulatory proteins, Crp family protein.
  
     0.484
sync_1860
Membrane associated GTPase.
  
     0.480
sync_0765
DnaJ domain protein; Identified by match to protein family HMM PF00226.
  
     0.451
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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