STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1824Pyridoxamine 5'-phosphate oxidase family protein; Identified by match to protein family HMM PF01243. (200 aa)    
Predicted Functional Partners:
sync_0479
Predicted oxidoreductase; Identified by match to protein family HMM PF00248.
  
 
 0.915
pdxJ
Pyridoxal phosphate biosynthetic protein PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
     
  0.900
sync_1825
Uncharacterized protein.
 
     0.804
sync_1581
Identified by match to protein family HMM PF05419.
  
     0.551
psbO
Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.
  
     0.537
sync_1555
Conserved hypothetical protein; Identified by similarity to GB:CAE20563.1; match to protein family HMM PF07082.
  
     0.506
sync_1690
Conserved hypothetical protein; Identified by similarity to GB:CAE07636.1.
  
     0.506
sync_1346
Possible ATP adenylyltransferase.
  
     0.475
sync_2028
Conserved hypothetical protein; Identified by similarity to GB:CAE08294.1.
  
     0.448
sync_2602
Uncharacterized conserved protein; Identified by match to protein family HMM PF02698.
  
     0.446
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.