Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
sync_1830Predicted enzyme of the cupin superfamily protein; Identified by match to protein family HMM PF05899. (107 aa)    
Predicted Functional Partners:
sync_1831
Cell death suppressor protein Lls1 homolog; Identified by match to protein family HMM PF00355.
       0.773
sync_1844
Carotenoid isomerase, putative; Identified by match to protein family HMM PF01593.
 
     0.648
sync_1176
Conserved hypothetical protein; Identified by match to protein family HMM PF01636.
  
     0.579
sync_1832
Protein of unknown function (DUF1499) superfamily protein; Identified by match to protein family HMM PF07386.
       0.480
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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