STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1844Carotenoid isomerase, putative; Identified by match to protein family HMM PF01593. (510 aa)    
Predicted Functional Partners:
crtB
Phytoene synthase; Identified by match to protein family HMM PF00494.
 
  
 0.899
sync_1830
Predicted enzyme of the cupin superfamily protein; Identified by match to protein family HMM PF05899.
 
     0.649
sync_0156
Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.
 
  
 0.626
chlM
Magnesium protoporphyrin O-methyltransferase; Identified by match to protein family HMM PF07109; match to protein family HMM TIGR02021.
 
  
 0.580
sync_1845
Possible outer membrane protein; Identified by match to protein family HMM PF04402.
       0.572
sync_1846
Identified by match to protein family HMM PF01694.
       0.572
sync_1468
Conserved hypothetical protein; Identified by similarity to GB:CAE07970.1.
  
     0.555
chlG
Chlorophyll synthase, ChlG; Identified by match to protein family HMM PF01040; match to protein family HMM TIGR01476; match to protein family HMM TIGR02056.
 
  
 0.519
sync_1523
Uncharacterized protein.
  
   
 0.515
chlD
Magnesium chelatase, ATPase subunit D; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
  
  
 0.496
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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