Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
sync_0469 | sync_0794 | Conserved hypothetical protein; Identified by similarity to GB:CAE21879.1. | Uncharacterized membrane protein. | 0.682 |
sync_0469 | sync_0937 | Conserved hypothetical protein; Identified by similarity to GB:CAE21879.1. | Conserved hypothetical protein. | 0.773 |
sync_0469 | sync_1149 | Conserved hypothetical protein; Identified by similarity to GB:CAE21879.1. | Uncharacterized membrane protein. | 0.770 |
sync_0469 | sync_1227 | Conserved hypothetical protein; Identified by similarity to GB:CAE21879.1. | Conserved hypothetical protein; Identified by similarity to GB:CAE20984.1. | 0.680 |
sync_0469 | sync_1540 | Conserved hypothetical protein; Identified by similarity to GB:CAE21879.1. | Bacterial regulatory proteins, Crp family protein. | 0.632 |
sync_0469 | sync_1721 | Conserved hypothetical protein; Identified by similarity to GB:CAE21879.1. | CheY-like domain containing protein. | 0.698 |
sync_0469 | sync_1860 | Conserved hypothetical protein; Identified by similarity to GB:CAE21879.1. | Membrane associated GTPase. | 0.763 |
sync_0469 | sync_1881 | Conserved hypothetical protein; Identified by similarity to GB:CAE21879.1. | Conserved hypothetical protein. | 0.772 |
sync_0469 | sync_2124 | Conserved hypothetical protein; Identified by similarity to GB:CAE21879.1. | AbrB family transciptional regulator. | 0.774 |
sync_0469 | sync_2257 | Conserved hypothetical protein; Identified by similarity to GB:CAE21879.1. | Uncharacterized conserved membrane protein. | 0.769 |
sync_0794 | sync_0469 | Uncharacterized membrane protein. | Conserved hypothetical protein; Identified by similarity to GB:CAE21879.1. | 0.682 |
sync_0794 | sync_0937 | Uncharacterized membrane protein. | Conserved hypothetical protein. | 0.750 |
sync_0794 | sync_1149 | Uncharacterized membrane protein. | Uncharacterized membrane protein. | 0.739 |
sync_0794 | sync_1227 | Uncharacterized membrane protein. | Conserved hypothetical protein; Identified by similarity to GB:CAE20984.1. | 0.757 |
sync_0794 | sync_1540 | Uncharacterized membrane protein. | Bacterial regulatory proteins, Crp family protein. | 0.746 |
sync_0794 | sync_1721 | Uncharacterized membrane protein. | CheY-like domain containing protein. | 0.761 |
sync_0794 | sync_1860 | Uncharacterized membrane protein. | Membrane associated GTPase. | 0.772 |
sync_0794 | sync_1881 | Uncharacterized membrane protein. | Conserved hypothetical protein. | 0.689 |
sync_0794 | sync_2124 | Uncharacterized membrane protein. | AbrB family transciptional regulator. | 0.737 |
sync_0794 | sync_2257 | Uncharacterized membrane protein. | Uncharacterized conserved membrane protein. | 0.769 |
page 1 of 6