Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sync_1864Possible endolysin. (224 aa)    
Predicted Functional Partners:
sync_0306
Repeats containing protein.
  
     0.666
sync_2015
Uncharacterized membrane protein.
  
     0.631
sync_0118
Conserved hypothetical protein.
  
     0.626
sync_2139
Conserved hypothetical protein.
  
     0.617
sync_1019
Conserved hypothetical protein; Identified by similarity to GB:CAE07461.1.
  
     0.587
sync_2938
Esterase/lipase/thioesterase family active site.
  
     0.579
sync_1040
Conserved hypothetical protein.
  
     0.555
sync_2918
Lipoprotein, putative; Identified by match to protein family HMM TIGR03042.
  
     0.546
sync_1041
Putative RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
     0.533
sync_2059
Hypothetical protein; Identified by Glimmer2; putative; Belongs to the OprB family.
  
     0.533
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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