sync_1867 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_1867

Uncharacterized protein. (132 aa)

Predicted Functional Partners:

thrS

0.773

sync_1865

0.566

glk

0.556

thrB

0.532

ndhD

0.423

opdA

0.423

sync_1872

0.416

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
glk	ndhD	sync_1868	sync_1870	Glucokinase; Identified by match to protein family HMM PF02685; match to protein family HMM TIGR00749; Belongs to the bacterial glucokinase family.	NAD(P)H-quinone oxidoreductase NdhD subunit; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.	0.622
glk	opdA	sync_1868	sync_1871	Glucokinase; Identified by match to protein family HMM PF02685; match to protein family HMM TIGR00749; Belongs to the bacterial glucokinase family.	Phosphofructokinase:Peptidase family M3; Identified by match to protein family HMM PF01432.	0.622
glk	sync_1865	sync_1868	sync_1865	Glucokinase; Identified by match to protein family HMM PF02685; match to protein family HMM TIGR00749; Belongs to the bacterial glucokinase family.	Conserved hypothetical protein.	0.420
glk	sync_1867	sync_1868	sync_1867	Glucokinase; Identified by match to protein family HMM PF02685; match to protein family HMM TIGR00749; Belongs to the bacterial glucokinase family.	Uncharacterized protein.	0.556
glk	sync_1872	sync_1868	sync_1872	Glucokinase; Identified by match to protein family HMM PF02685; match to protein family HMM TIGR00749; Belongs to the bacterial glucokinase family.	Possible Arginine repressor, C-terminal domain.	0.560
glk	thrB	sync_1868	sync_1869	Glucokinase; Identified by match to protein family HMM PF02685; match to protein family HMM TIGR00749; Belongs to the bacterial glucokinase family.	Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.	0.781
glk	thrS	sync_1868	sync_1866	Glucokinase; Identified by match to protein family HMM PF02685; match to protein family HMM TIGR00749; Belongs to the bacterial glucokinase family.	threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr).	0.635
ndhD	glk	sync_1870	sync_1868	NAD(P)H-quinone oxidoreductase NdhD subunit; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.	Glucokinase; Identified by match to protein family HMM PF02685; match to protein family HMM TIGR00749; Belongs to the bacterial glucokinase family.	0.622
ndhD	opdA	sync_1870	sync_1871	NAD(P)H-quinone oxidoreductase NdhD subunit; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.	Phosphofructokinase:Peptidase family M3; Identified by match to protein family HMM PF01432.	0.804
ndhD	sync_1867	sync_1870	sync_1867	NAD(P)H-quinone oxidoreductase NdhD subunit; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.	Uncharacterized protein.	0.423
ndhD	sync_1872	sync_1870	sync_1872	NAD(P)H-quinone oxidoreductase NdhD subunit; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.	Possible Arginine repressor, C-terminal domain.	0.757
ndhD	thrB	sync_1870	sync_1869	NAD(P)H-quinone oxidoreductase NdhD subunit; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.	Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.	0.646
ndhD	thrS	sync_1870	sync_1866	NAD(P)H-quinone oxidoreductase NdhD subunit; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.	threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr).	0.491
opdA	glk	sync_1871	sync_1868	Phosphofructokinase:Peptidase family M3; Identified by match to protein family HMM PF01432.	Glucokinase; Identified by match to protein family HMM PF02685; match to protein family HMM TIGR00749; Belongs to the bacterial glucokinase family.	0.622
opdA	ndhD	sync_1871	sync_1870	Phosphofructokinase:Peptidase family M3; Identified by match to protein family HMM PF01432.	NAD(P)H-quinone oxidoreductase NdhD subunit; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.	0.804
opdA	sync_1867	sync_1871	sync_1867	Phosphofructokinase:Peptidase family M3; Identified by match to protein family HMM PF01432.	Uncharacterized protein.	0.423
opdA	sync_1872	sync_1871	sync_1872	Phosphofructokinase:Peptidase family M3; Identified by match to protein family HMM PF01432.	Possible Arginine repressor, C-terminal domain.	0.757
opdA	thrB	sync_1871	sync_1869	Phosphofructokinase:Peptidase family M3; Identified by match to protein family HMM PF01432.	Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.	0.646
opdA	thrS	sync_1871	sync_1866	Phosphofructokinase:Peptidase family M3; Identified by match to protein family HMM PF01432.	threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr).	0.491
sync_1865	glk	sync_1865	sync_1868	Conserved hypothetical protein.	Glucokinase; Identified by match to protein family HMM PF02685; match to protein family HMM TIGR00749; Belongs to the bacterial glucokinase family.	0.420