sync_1882 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_1882

Uncharacterized conserved protein. (131 aa)

Predicted Functional Partners:

sync_1881

0.746

sync_1879

0.531

sync_1880

0.531

sync_1883

0.520

folB

0.452

proA

0.452

sync_1884

0.419

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
folB	proA	sync_1877	sync_1878	Dihydroneopterin aldolase; Identified by match to protein family HMM PF02152; match to protein family HMM TIGR00526.	Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.	0.801
folB	sync_1879	sync_1877	sync_1879	Dihydroneopterin aldolase; Identified by match to protein family HMM PF02152; match to protein family HMM TIGR00526.	ROK family sugar kinase; Identified by match to protein family HMM PF00480.	0.668
folB	sync_1880	sync_1877	sync_1880	Dihydroneopterin aldolase; Identified by match to protein family HMM PF02152; match to protein family HMM TIGR00526.	Uncharacterized conserved protein; Identified by match to protein family HMM PF04357.	0.670
folB	sync_1881	sync_1877	sync_1881	Dihydroneopterin aldolase; Identified by match to protein family HMM PF02152; match to protein family HMM TIGR00526.	Conserved hypothetical protein.	0.475
folB	sync_1882	sync_1877	sync_1882	Dihydroneopterin aldolase; Identified by match to protein family HMM PF02152; match to protein family HMM TIGR00526.	Uncharacterized conserved protein.	0.452
proA	folB	sync_1878	sync_1877	Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.	Dihydroneopterin aldolase; Identified by match to protein family HMM PF02152; match to protein family HMM TIGR00526.	0.801
proA	sync_1879	sync_1878	sync_1879	Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.	ROK family sugar kinase; Identified by match to protein family HMM PF00480.	0.673
proA	sync_1880	sync_1878	sync_1880	Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.	Uncharacterized conserved protein; Identified by match to protein family HMM PF04357.	0.687
proA	sync_1881	sync_1878	sync_1881	Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.	Conserved hypothetical protein.	0.476
proA	sync_1882	sync_1878	sync_1882	Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.	Uncharacterized conserved protein.	0.452
sync_1879	folB	sync_1879	sync_1877	ROK family sugar kinase; Identified by match to protein family HMM PF00480.	Dihydroneopterin aldolase; Identified by match to protein family HMM PF02152; match to protein family HMM TIGR00526.	0.668
sync_1879	proA	sync_1879	sync_1878	ROK family sugar kinase; Identified by match to protein family HMM PF00480.	Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.	0.673
sync_1879	sync_1880	sync_1879	sync_1880	ROK family sugar kinase; Identified by match to protein family HMM PF00480.	Uncharacterized conserved protein; Identified by match to protein family HMM PF04357.	0.804
sync_1879	sync_1881	sync_1879	sync_1881	ROK family sugar kinase; Identified by match to protein family HMM PF00480.	Conserved hypothetical protein.	0.578
sync_1879	sync_1882	sync_1879	sync_1882	ROK family sugar kinase; Identified by match to protein family HMM PF00480.	Uncharacterized conserved protein.	0.531
sync_1880	folB	sync_1880	sync_1877	Uncharacterized conserved protein; Identified by match to protein family HMM PF04357.	Dihydroneopterin aldolase; Identified by match to protein family HMM PF02152; match to protein family HMM TIGR00526.	0.670
sync_1880	proA	sync_1880	sync_1878	Uncharacterized conserved protein; Identified by match to protein family HMM PF04357.	Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.	0.687
sync_1880	sync_1879	sync_1880	sync_1879	Uncharacterized conserved protein; Identified by match to protein family HMM PF04357.	ROK family sugar kinase; Identified by match to protein family HMM PF00480.	0.804
sync_1880	sync_1881	sync_1880	sync_1881	Uncharacterized conserved protein; Identified by match to protein family HMM PF04357.	Conserved hypothetical protein.	0.823
sync_1880	sync_1882	sync_1880	sync_1882	Uncharacterized conserved protein; Identified by match to protein family HMM PF04357.	Uncharacterized conserved protein.	0.531