sync_1884 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_1884

X-Pro dipeptidyl-peptidase (S15 family); Identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976. (520 aa)

Predicted Functional Partners:

sync_1883

0.665

sync_1885

0.651

glgB

0.534

sync_1881

0.518

sync_1667

0.495

sync_0215

0.477

petE

0.469

sync_1222

0.427

sync_2268

0.427

sync_1882

0.419

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
glgB	petE	sync_1886	sync_1889	1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.	Plastocyanin; Identified by match to protein family HMM PF00127; match to protein family HMM TIGR02656.	0.496
glgB	sync_1883	sync_1886	sync_1883	1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.	Conserved hypothetical protein; Identified by similarity to GB:CAE20616.1.	0.456
glgB	sync_1884	sync_1886	sync_1884	1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.	X-Pro dipeptidyl-peptidase (S15 family); Identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976.	0.534
glgB	sync_1885	sync_1886	sync_1885	1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.	Conserved hypothetical protein.	0.551
petE	glgB	sync_1889	sync_1886	Plastocyanin; Identified by match to protein family HMM PF00127; match to protein family HMM TIGR02656.	1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.	0.496
petE	sync_1667	sync_1889	sync_1667	Plastocyanin; Identified by match to protein family HMM PF00127; match to protein family HMM TIGR02656.	Arylesterase.	0.427
petE	sync_1884	sync_1889	sync_1884	Plastocyanin; Identified by match to protein family HMM PF00127; match to protein family HMM TIGR02656.	X-Pro dipeptidyl-peptidase (S15 family); Identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976.	0.469
sync_0215	sync_1222	sync_0215	sync_1222	Conserved hypothetical protein; Identified by similarity to GB:AAQ00795.1.	Conserved hypothetical protein.	0.581
sync_0215	sync_1667	sync_0215	sync_1667	Conserved hypothetical protein; Identified by similarity to GB:AAQ00795.1.	Arylesterase.	0.696
sync_0215	sync_1881	sync_0215	sync_1881	Conserved hypothetical protein; Identified by similarity to GB:AAQ00795.1.	Conserved hypothetical protein.	0.554
sync_0215	sync_1884	sync_0215	sync_1884	Conserved hypothetical protein; Identified by similarity to GB:AAQ00795.1.	X-Pro dipeptidyl-peptidase (S15 family); Identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976.	0.477
sync_0215	sync_2268	sync_0215	sync_2268	Conserved hypothetical protein; Identified by similarity to GB:AAQ00795.1.	Conserved hypothetical protein; Identified by similarity to GB:CAE21616.1.	0.770
sync_1222	sync_0215	sync_1222	sync_0215	Conserved hypothetical protein.	Conserved hypothetical protein; Identified by similarity to GB:AAQ00795.1.	0.581
sync_1222	sync_1881	sync_1222	sync_1881	Conserved hypothetical protein.	Conserved hypothetical protein.	0.551
sync_1222	sync_1884	sync_1222	sync_1884	Conserved hypothetical protein.	X-Pro dipeptidyl-peptidase (S15 family); Identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976.	0.427
sync_1222	sync_2268	sync_1222	sync_2268	Conserved hypothetical protein.	Conserved hypothetical protein; Identified by similarity to GB:CAE21616.1.	0.445
sync_1667	petE	sync_1667	sync_1889	Arylesterase.	Plastocyanin; Identified by match to protein family HMM PF00127; match to protein family HMM TIGR02656.	0.427
sync_1667	sync_0215	sync_1667	sync_0215	Arylesterase.	Conserved hypothetical protein; Identified by similarity to GB:AAQ00795.1.	0.696
sync_1667	sync_1884	sync_1667	sync_1884	Arylesterase.	X-Pro dipeptidyl-peptidase (S15 family); Identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976.	0.495
sync_1667	sync_2268	sync_1667	sync_2268	Arylesterase.	Conserved hypothetical protein; Identified by similarity to GB:CAE21616.1.	0.484