STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sync_1884X-Pro dipeptidyl-peptidase (S15 family); Identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976. (520 aa)    
Predicted Functional Partners:
sync_1883
Conserved hypothetical protein; Identified by similarity to GB:CAE20616.1.
       0.673
sync_1885
Conserved hypothetical protein.
       0.651
sync_1881
Conserved hypothetical protein.
 
     0.569
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
       0.563
petE
Plastocyanin; Identified by match to protein family HMM PF00127; match to protein family HMM TIGR02656.
 
     0.528
sync_1667
Arylesterase.
  
     0.495
sync_0215
Conserved hypothetical protein; Identified by similarity to GB:AAQ00795.1.
  
     0.477
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
       0.456
wcaG-4
NAD dependent epimerase/dehydratase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993.
       0.456
sync_1222
Conserved hypothetical protein.
  
   
 0.428
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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