sync_1890 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_1890

Possible cytochrome C6 (soluble cytochrome F) (cytochrome c553); Identified by match to protein family HMM PF00034. (144 aa)

Predicted Functional Partners:

psbV

0.841

psbU

0.790

sync_1891

0.773

sync_1892

0.773

sync_2460

0.747

petE

0.745

sync_2604

0.706

cpcA

0.678

psbO

0.675

sync_0290

0.671

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cpcA	psbO	sync_0488	sync_0353	Phycocyanin, alpha subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01338.	Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.	0.723
cpcA	psbU	sync_0488	sync_2545	Phycocyanin, alpha subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01338.	Photosystem II 12 kDa extrinsic protein PsbU; Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation.	0.792
cpcA	psbV	sync_0488	sync_2250	Phycocyanin, alpha subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01338.	Cytochrome c-550; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II.	0.828
cpcA	sync_1890	sync_0488	sync_1890	Phycocyanin, alpha subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01338.	Possible cytochrome C6 (soluble cytochrome F) (cytochrome c553); Identified by match to protein family HMM PF00034.	0.678
petE	psbO	sync_1889	sync_0353	Plastocyanin; Identified by match to protein family HMM PF00127; match to protein family HMM TIGR02656.	Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.	0.582
petE	sync_1890	sync_1889	sync_1890	Plastocyanin; Identified by match to protein family HMM PF00127; match to protein family HMM TIGR02656.	Possible cytochrome C6 (soluble cytochrome F) (cytochrome c553); Identified by match to protein family HMM PF00034.	0.745
petE	sync_1891	sync_1889	sync_1891	Plastocyanin; Identified by match to protein family HMM PF00127; match to protein family HMM TIGR02656.	Conserved hypothetical protein.	0.623
petE	sync_1892	sync_1889	sync_1892	Plastocyanin; Identified by match to protein family HMM PF00127; match to protein family HMM TIGR02656.	Conserved hypothetical protein.	0.623
psbO	cpcA	sync_0353	sync_0488	Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.	Phycocyanin, alpha subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01338.	0.723
psbO	petE	sync_0353	sync_1889	Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.	Plastocyanin; Identified by match to protein family HMM PF00127; match to protein family HMM TIGR02656.	0.582
psbO	psbU	sync_0353	sync_2545	Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.	Photosystem II 12 kDa extrinsic protein PsbU; Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation.	0.999
psbO	psbV	sync_0353	sync_2250	Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.	Cytochrome c-550; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II.	0.998
psbO	sync_0290	sync_0353	sync_0290	Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.	Conserved hypothetical protein.	0.772
psbO	sync_1890	sync_0353	sync_1890	Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.	Possible cytochrome C6 (soluble cytochrome F) (cytochrome c553); Identified by match to protein family HMM PF00034.	0.675
psbO	sync_2460	sync_0353	sync_2460	Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.	Conserved hypothetical protein; Identified by similarity to GB:CAE06850.1; match to protein family HMM PF02325.	0.771
psbU	cpcA	sync_2545	sync_0488	Photosystem II 12 kDa extrinsic protein PsbU; Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation.	Phycocyanin, alpha subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01338.	0.792
psbU	psbO	sync_2545	sync_0353	Photosystem II 12 kDa extrinsic protein PsbU; Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation.	Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.	0.999
psbU	psbV	sync_2545	sync_2250	Photosystem II 12 kDa extrinsic protein PsbU; Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation.	Cytochrome c-550; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II.	0.999
psbU	sync_0290	sync_2545	sync_0290	Photosystem II 12 kDa extrinsic protein PsbU; Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation.	Conserved hypothetical protein.	0.722
psbU	sync_1890	sync_2545	sync_1890	Photosystem II 12 kDa extrinsic protein PsbU; Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation.	Possible cytochrome C6 (soluble cytochrome F) (cytochrome c553); Identified by match to protein family HMM PF00034.	0.790