STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1901Uncharacterized conserved membrane protein. (188 aa)    
Predicted Functional Partners:
sync_1900
Conserved hypothetical protein.
       0.784
sync_0794
Uncharacterized membrane protein.
  
     0.542
sync_1903
Uncharacterized conserved protein; Identified by match to protein family HMM PF06803.
 
     0.521
sync_1902
Possible type II alternative RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.518
sync_2942
Uncharacterized membrane protein.
  
     0.513
sync_1343
Conserved hypothetical protein; Identified by similarity to GB:CAE20910.1.
  
     0.492
sync_1860
Membrane associated GTPase.
  
     0.488
sync_2105
Uncharacterized Zn ribbon-containing conserved protein.
  
     0.483
sync_1356
Hypothetical protein.
  
     0.454
sync_1168
Conserved hypothetical protein.
  
     0.453
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.