Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
sync_0291 | sync_0392 | Conserved hypothetical protein. | Proline-rich region. | 0.773 |
sync_0291 | sync_1900 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.756 |
sync_0291 | sync_1906 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.561 |
sync_0291 | sync_2274 | Conserved hypothetical protein. | Ferredoxin-thioredoxin reductase variable chain. | 0.763 |
sync_0291 | sync_2628 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.633 |
sync_0392 | sync_0291 | Proline-rich region. | Conserved hypothetical protein. | 0.773 |
sync_0392 | sync_1900 | Proline-rich region. | Conserved hypothetical protein. | 0.772 |
sync_0392 | sync_1906 | Proline-rich region. | Conserved hypothetical protein. | 0.485 |
sync_0392 | sync_2274 | Proline-rich region. | Ferredoxin-thioredoxin reductase variable chain. | 0.761 |
sync_0392 | sync_2628 | Proline-rich region. | Conserved hypothetical protein. | 0.749 |
sync_1900 | sync_0291 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.756 |
sync_1900 | sync_0392 | Conserved hypothetical protein. | Proline-rich region. | 0.772 |
sync_1900 | sync_1902 | Conserved hypothetical protein. | Possible type II alternative RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.523 |
sync_1900 | sync_1903 | Conserved hypothetical protein. | Uncharacterized conserved protein; Identified by match to protein family HMM PF06803. | 0.410 |
sync_1900 | sync_1904 | Conserved hypothetical protein. | Conserved hypothetical protein; Identified by similarity to GB:CAE20633.1. | 0.410 |
sync_1900 | sync_1906 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.535 |
sync_1900 | sync_2274 | Conserved hypothetical protein. | Ferredoxin-thioredoxin reductase variable chain. | 0.684 |
sync_1900 | sync_2628 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.764 |
sync_1902 | sync_1900 | Possible type II alternative RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Conserved hypothetical protein. | 0.523 |
sync_1902 | sync_1903 | Possible type II alternative RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Uncharacterized conserved protein; Identified by match to protein family HMM PF06803. | 0.621 |
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