STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1920Gluconolactonase precursor. (315 aa)    
Predicted Functional Partners:
sync_0856
Gluconolactonase precursor.
  
 
 
0.930
sync_1918
Glucose 1-dehydrogenase; Identified by match to protein family HMM PF00106.
  
 
 0.913
sync_0822
Alcohol dehydrogenase; Identified by match to protein family HMM PF00248.
  
 
  0.903
sync_1921
Conserved hypothetical protein.
 
     0.815
pyrC
Dihydroorotase, homodimeric type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.
       0.665
sync_1923
Sulfate transporter, sulfate permease (SulP) family protein; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740.
  
    0.665
sync_0861
Mandelate racemase / muconate lactonizing enzyme, N-terminal domain protein; Identified by match to protein family HMM PF01188; match to protein family HMM PF02746.
 
   
 0.616
sync_1919
Hypothetical protein; Identified by Glimmer2; putative.
       0.508
sync_1924
K+-dependent Na+/Ca+ exchanger related-protein; Identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367.
       0.476
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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