sync_1924 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_1924

K+-dependent Na+/Ca+ exchanger related-protein; Identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367. (367 aa)

Predicted Functional Partners:

pyrC

0.567

sync_1925

0.551

sync_1926

0.551

sync_1923

0.545

sync_2162

0.506

sync_0156

0.487

sync_1921

0.485

sync_1920

0.476

sync_1927

0.462

sync_1928

0.460

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
pyrC	sync_1920	sync_1922	sync_1920	Dihydroorotase, homodimeric type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.	Gluconolactonase precursor.	0.665
pyrC	sync_1921	sync_1922	sync_1921	Dihydroorotase, homodimeric type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.	Conserved hypothetical protein.	0.675
pyrC	sync_1923	sync_1922	sync_1923	Dihydroorotase, homodimeric type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.	Sulfate transporter, sulfate permease (SulP) family protein; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740.	0.773
pyrC	sync_1924	sync_1922	sync_1924	Dihydroorotase, homodimeric type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.	K+-dependent Na+/Ca+ exchanger related-protein; Identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367.	0.567
pyrC	sync_1925	sync_1922	sync_1925	Dihydroorotase, homodimeric type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.	Conserved hypothetical protein.	0.402
pyrC	sync_1926	sync_1922	sync_1926	Dihydroorotase, homodimeric type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.	Conserved hypothetical protein.	0.402
sync_0156	sync_1921	sync_0156	sync_1921	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Conserved hypothetical protein.	0.511
sync_0156	sync_1923	sync_0156	sync_1923	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Sulfate transporter, sulfate permease (SulP) family protein; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740.	0.869
sync_0156	sync_1924	sync_0156	sync_1924	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	K+-dependent Na+/Ca+ exchanger related-protein; Identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367.	0.487
sync_0156	sync_1927	sync_0156	sync_1927	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Possible cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	0.766
sync_0156	sync_1928	sync_0156	sync_1928	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Cytochrome c oxidase subunit I; Identified by match to protein family HMM PF00115; Belongs to the heme-copper respiratory oxidase family.	0.782
sync_0156	sync_2162	sync_0156	sync_2162	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Transporter, monovalent cation:proton antiporter-2 (CPA2) family protein; Identified by match to protein family HMM PF00999.	0.421
sync_1920	pyrC	sync_1920	sync_1922	Gluconolactonase precursor.	Dihydroorotase, homodimeric type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.	0.665
sync_1920	sync_1921	sync_1920	sync_1921	Gluconolactonase precursor.	Conserved hypothetical protein.	0.815
sync_1920	sync_1923	sync_1920	sync_1923	Gluconolactonase precursor.	Sulfate transporter, sulfate permease (SulP) family protein; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740.	0.665
sync_1920	sync_1924	sync_1920	sync_1924	Gluconolactonase precursor.	K+-dependent Na+/Ca+ exchanger related-protein; Identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367.	0.476
sync_1921	pyrC	sync_1921	sync_1922	Conserved hypothetical protein.	Dihydroorotase, homodimeric type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.	0.675
sync_1921	sync_0156	sync_1921	sync_0156	Conserved hypothetical protein.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.511
sync_1921	sync_1920	sync_1921	sync_1920	Conserved hypothetical protein.	Gluconolactonase precursor.	0.815
sync_1921	sync_1923	sync_1921	sync_1923	Conserved hypothetical protein.	Sulfate transporter, sulfate permease (SulP) family protein; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740.	0.675