sync_1925 protein (Synechococcus sp. CC9311)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_1925

Conserved hypothetical protein. (168 aa)

Predicted Functional Partners:

sync_1926

0.952

sync_1930

0.814

sync_1927

0.807

sync_1929

0.769

sync_0499

0.742

sync_0497

0.717

sync_2228

0.715

sync_0500

0.708

sync_1142

0.705

sync_0345

0.703

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
sync_0345	sync_1142	Uncharacterized secreted or membrane protein.	Conserved hypothetical protein.	0.580
sync_0345	sync_1925	Uncharacterized secreted or membrane protein.	Conserved hypothetical protein.	0.703
sync_0345	sync_1926	Uncharacterized secreted or membrane protein.	Conserved hypothetical protein.	0.713
sync_0497	sync_0499	Bilin biosynthesis protein mpeV; Identified by match to protein family HMM PF03130.	Bilin biosynthesis protein cpeY.	0.787
sync_0497	sync_0500	Bilin biosynthesis protein mpeV; Identified by match to protein family HMM PF03130.	Bilin biosynthesis protein cpeZ; Identified by match to protein family HMM PF02985.	0.800
sync_0497	sync_1142	Bilin biosynthesis protein mpeV; Identified by match to protein family HMM PF03130.	Conserved hypothetical protein.	0.412
sync_0497	sync_1925	Bilin biosynthesis protein mpeV; Identified by match to protein family HMM PF03130.	Conserved hypothetical protein.	0.717
sync_0497	sync_1926	Bilin biosynthesis protein mpeV; Identified by match to protein family HMM PF03130.	Conserved hypothetical protein.	0.691
sync_0497	sync_2228	Bilin biosynthesis protein mpeV; Identified by match to protein family HMM PF03130.	CpeY protein; Identified by match to protein family HMM PF03130.	0.787
sync_0499	sync_0497	Bilin biosynthesis protein cpeY.	Bilin biosynthesis protein mpeV; Identified by match to protein family HMM PF03130.	0.787
sync_0499	sync_0500	Bilin biosynthesis protein cpeY.	Bilin biosynthesis protein cpeZ; Identified by match to protein family HMM PF02985.	0.929
sync_0499	sync_1142	Bilin biosynthesis protein cpeY.	Conserved hypothetical protein.	0.426
sync_0499	sync_1925	Bilin biosynthesis protein cpeY.	Conserved hypothetical protein.	0.742
sync_0499	sync_1926	Bilin biosynthesis protein cpeY.	Conserved hypothetical protein.	0.726
sync_0499	sync_1930	Bilin biosynthesis protein cpeY.	Dehydrogenase subunit-like protein; Identified by match to protein family HMM PF05199.	0.440
sync_0499	sync_2228	Bilin biosynthesis protein cpeY.	CpeY protein; Identified by match to protein family HMM PF03130.	0.929
sync_0500	sync_0497	Bilin biosynthesis protein cpeZ; Identified by match to protein family HMM PF02985.	Bilin biosynthesis protein mpeV; Identified by match to protein family HMM PF03130.	0.800
sync_0500	sync_0499	Bilin biosynthesis protein cpeZ; Identified by match to protein family HMM PF02985.	Bilin biosynthesis protein cpeY.	0.929
sync_0500	sync_1142	Bilin biosynthesis protein cpeZ; Identified by match to protein family HMM PF02985.	Conserved hypothetical protein.	0.414
sync_0500	sync_1925	Bilin biosynthesis protein cpeZ; Identified by match to protein family HMM PF02985.	Conserved hypothetical protein.	0.708