STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1930Dehydrogenase subunit-like protein; Identified by match to protein family HMM PF05199. (505 aa)    
Predicted Functional Partners:
sync_1926
Conserved hypothetical protein.
 
     0.830
sync_1925
Conserved hypothetical protein.
 
     0.814
sync_1228
Uncharacterized membrane protein.
    
 0.789
sync_1917
Conserved hypothetical protein.
 
  
 0.767
sync_1927
Possible cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
     0.719
sync_1929
Cytochrome c oxidase subunit III.
 
     0.707
sync_1928
Cytochrome c oxidase subunit I; Identified by match to protein family HMM PF00115; Belongs to the heme-copper respiratory oxidase family.
       0.660
sync_0156
Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.
 
  
 0.650
sync_0154
Membrane protein, putative.
 
   
 0.536
sync_1921
Conserved hypothetical protein.
 
   
 0.453
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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