STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1935Conserved hypothetical protein. (212 aa)    
Predicted Functional Partners:
sync_1936
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
     0.992
sync_1170
Possible L-Asparaginase II; Identified by match to protein family HMM PF04055.
 
     0.797
sync_1934
Peptidase, S1C (protease Do) family protein; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595.
       0.784
sync_2809
Uncharacterized conserved membrane protein; Identified by match to protein family HMM PF00597.
 
     0.717
sync_0906
SAM (and some other nucleotide) binding motif:Generic methyltransferase.
 
     0.653
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.
       0.602
sync_1832
Protein of unknown function (DUF1499) superfamily protein; Identified by match to protein family HMM PF07386.
 
     0.423
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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