Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
sync_1951Thioredoxin reductase; Identified by match to protein family HMM PF03486; match to protein family HMM PF07992. (319 aa)    
Predicted Functional Partners:
trxB
Thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292.
 
0.962
sync_0230
Selenide,water dikinase; Identified by match to protein family HMM PF02769.
    
 0.932
sync_2480
Cysteine desulfurase, SufS family protein; Identified by match to protein family HMM PF00266; match to protein family HMM TIGR01979; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
   
 
  0.903
metB
Cystathionine beta-lyase/cystathionine gamma-synthase; Identified by match to protein family HMM PF01053.
   
 
 0.902
sync_1952
Conserved hypothetical protein.
       0.773
petF-1
Ferredoxin; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.
   
 
 0.764
trx-1
Thioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; Belongs to the thioredoxin family.
 
 
 0.671
sync_2254
Ferredoxin; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.
    
 
 0.630
petF-2
Ferredoxin; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.
    
 
 0.630
hflX
GTP-binding protein HflX homolog; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis.
  
 
 0.563
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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