STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sync_1961Hypothetical protein; Identified by Glimmer2; putative. (41 aa)    
Predicted Functional Partners:
sync_1960
Possible carbon dioxide concentrating mechanism protein CcmK; Identified by match to protein family HMM PF00936.
       0.566
sync_1957
CO2 hydration protein; Identified by match to protein family HMM TIGR01964.
       0.420
sync_1958
NADH-ubiquinone/plastoquinone oxidoreductase, subunit 4 family protein; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.
       0.420
sync_1959
NAD(P)H dehydrogenase, subunit NdhF3 family protein; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01960.
       0.420
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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