sync_1963 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_1963

Carboxysome peptide A; Identified by match to protein family HMM PF03319; match to protein family HMM TIGR02703. (94 aa)

Predicted Functional Partners:

sync_1965

0.977

sync_1968

0.958

sync_1964

0.956

cbbS

0.887

sync_1970

0.885

sync_1962

0.828

sync_1946

0.813

sync_1960

0.759

sync_0528

0.731

cbbL

0.700

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cbbL	cbbS	sync_1967	sync_1966	Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.	Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.	0.999
cbbL	sync_1946	sync_1967	sync_1946	Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.	Possible pterin-4 alpha-carbinolamine dehydratase-like protein.	0.485
cbbL	sync_1962	sync_1967	sync_1962	Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.	Carboxysome peptide A; Identified by match to protein family HMM PF03319; match to protein family HMM TIGR02704.	0.710
cbbL	sync_1963	sync_1967	sync_1963	Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.	Carboxysome peptide A; Identified by match to protein family HMM PF03319; match to protein family HMM TIGR02703.	0.700
cbbL	sync_1964	sync_1967	sync_1964	Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.	Carboxysome shell protein CsoS3; Identified by match to protein family HMM TIGR02701.	0.919
cbbL	sync_1965	sync_1967	sync_1965	Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.	Hypothetical protein; Identified by Glimmer2; putative.	0.761
cbbL	sync_1968	sync_1967	sync_1968	Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.	Carbon dioxide concentrating mechanism protein ccmK; Identified by match to protein family HMM PF00936.	0.847
cbbS	cbbL	sync_1966	sync_1967	Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.	Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.	0.999
cbbS	sync_0528	sync_1966	sync_0528	Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.	Carbohydrate kinase, FGGY family protein; Identified by match to protein family HMM PF00370.	0.579
cbbS	sync_1946	sync_1966	sync_1946	Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.	Possible pterin-4 alpha-carbinolamine dehydratase-like protein.	0.720
cbbS	sync_1962	sync_1966	sync_1962	Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.	Carboxysome peptide A; Identified by match to protein family HMM PF03319; match to protein family HMM TIGR02704.	0.891
cbbS	sync_1963	sync_1966	sync_1963	Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.	Carboxysome peptide A; Identified by match to protein family HMM PF03319; match to protein family HMM TIGR02703.	0.887
cbbS	sync_1964	sync_1966	sync_1964	Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.	Carboxysome shell protein CsoS3; Identified by match to protein family HMM TIGR02701.	0.969
cbbS	sync_1965	sync_1966	sync_1965	Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.	Hypothetical protein; Identified by Glimmer2; putative.	0.908
cbbS	sync_1968	sync_1966	sync_1968	Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.	Carbon dioxide concentrating mechanism protein ccmK; Identified by match to protein family HMM PF00936.	0.791
cbbS	sync_1970	sync_1966	sync_1970	Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.	Conserved hypothetical protein; Identified by similarity to GB:CAE19006.1.	0.479
sync_0528	cbbS	sync_0528	sync_1966	Carbohydrate kinase, FGGY family protein; Identified by match to protein family HMM PF00370.	Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.	0.579
sync_0528	sync_1946	sync_0528	sync_1946	Carbohydrate kinase, FGGY family protein; Identified by match to protein family HMM PF00370.	Possible pterin-4 alpha-carbinolamine dehydratase-like protein.	0.739
sync_0528	sync_1962	sync_0528	sync_1962	Carbohydrate kinase, FGGY family protein; Identified by match to protein family HMM PF00370.	Carboxysome peptide A; Identified by match to protein family HMM PF03319; match to protein family HMM TIGR02704.	0.733
sync_0528	sync_1963	sync_0528	sync_1963	Carbohydrate kinase, FGGY family protein; Identified by match to protein family HMM PF00370.	Carboxysome peptide A; Identified by match to protein family HMM PF03319; match to protein family HMM TIGR02703.	0.731