Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cbbSRibulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101. (113 aa)    
Predicted Functional Partners:
cbbL
Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.
 
 0.999
sync_1711
Phosphoribulokinase; Identified by match to protein family HMM PF00485.
 
 
 0.977
sync_1964
Carboxysome shell protein CsoS3; Identified by match to protein family HMM TIGR02701.
 
 
 
 0.969
pgk
Phosphoglycerate kinase; Identified by match to protein family HMM PF00162; Belongs to the phosphoglycerate kinase family.
    
 0.932
sync_1965
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.908
gph
Haloacid dehalogenase/epoxide hydrolase family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.
    
 0.905
sync_1318
Phosphoribulokinase/uridine kinase family enzyme.
     
  0.900
sync_1962
Carboxysome peptide A; Identified by match to protein family HMM PF03319; match to protein family HMM TIGR02704.
 
 
 
 0.891
sync_1963
Carboxysome peptide A; Identified by match to protein family HMM PF03319; match to protein family HMM TIGR02703.
 
 
 
 0.887
sync_0948
Carbonic anhydrase; Identified by match to protein family HMM PF00484; match to protein family HMM TIGR01409.
    
 
 0.808
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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