STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbbLRibulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. (470 aa)    
Predicted Functional Partners:
cbbS
Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.
 
 0.999
sync_1711
Phosphoribulokinase; Identified by match to protein family HMM PF00485.
 
 
 0.979
pgk
Phosphoglycerate kinase; Identified by match to protein family HMM PF00162; Belongs to the phosphoglycerate kinase family.
    
 0.916
gph
Haloacid dehalogenase/epoxide hydrolase family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.
     
 0.909
sync_1318
Phosphoribulokinase/uridine kinase family enzyme.
     
  0.900
sync_1968
Carbon dioxide concentrating mechanism protein ccmK; Identified by match to protein family HMM PF00936.
     
 0.854
mtnD
ARD/ARD' family protein; Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway.
  
  
 0.819
fbp
Transferase hexapaptide repeat protein.
    
 
 0.762
sync_1965
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.728
sync_1964
Carboxysome shell protein CsoS3; Identified by match to protein family HMM TIGR02701.
 
   
 0.719
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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