sync_1970 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_1970

Conserved hypothetical protein; Identified by similarity to GB:CAE19006.1. (216 aa)

Predicted Functional Partners:

sync_1962

0.925

sync_1963

0.925

sync_1968

0.826

sync_1965

0.801

sync_1960

0.796

sync_1964

0.791

sync_1946

0.774

sync_0528

0.701

sync_1971

0.558

cbbS

0.529

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cbbS	sync_0528	sync_1966	sync_0528	Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.	Carbohydrate kinase, FGGY family protein; Identified by match to protein family HMM PF00370.	0.579
cbbS	sync_1946	sync_1966	sync_1946	Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.	Possible pterin-4 alpha-carbinolamine dehydratase-like protein.	0.685
cbbS	sync_1962	sync_1966	sync_1962	Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.	Carboxysome peptide A; Identified by match to protein family HMM PF03319; match to protein family HMM TIGR02704.	0.886
cbbS	sync_1963	sync_1966	sync_1963	Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.	Carboxysome peptide A; Identified by match to protein family HMM PF03319; match to protein family HMM TIGR02703.	0.882
cbbS	sync_1964	sync_1966	sync_1964	Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.	Carboxysome shell protein CsoS3; Identified by match to protein family HMM TIGR02701.	0.888
cbbS	sync_1965	sync_1966	sync_1965	Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.	Hypothetical protein; Identified by Glimmer2; putative.	0.878
cbbS	sync_1968	sync_1966	sync_1968	Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.	Carbon dioxide concentrating mechanism protein ccmK; Identified by match to protein family HMM PF00936.	0.806
cbbS	sync_1970	sync_1966	sync_1970	Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.	Conserved hypothetical protein; Identified by similarity to GB:CAE19006.1.	0.529
sync_0528	cbbS	sync_0528	sync_1966	Carbohydrate kinase, FGGY family protein; Identified by match to protein family HMM PF00370.	Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.	0.579
sync_0528	sync_1946	sync_0528	sync_1946	Carbohydrate kinase, FGGY family protein; Identified by match to protein family HMM PF00370.	Possible pterin-4 alpha-carbinolamine dehydratase-like protein.	0.737
sync_0528	sync_1962	sync_0528	sync_1962	Carbohydrate kinase, FGGY family protein; Identified by match to protein family HMM PF00370.	Carboxysome peptide A; Identified by match to protein family HMM PF03319; match to protein family HMM TIGR02704.	0.733
sync_0528	sync_1963	sync_0528	sync_1963	Carbohydrate kinase, FGGY family protein; Identified by match to protein family HMM PF00370.	Carboxysome peptide A; Identified by match to protein family HMM PF03319; match to protein family HMM TIGR02703.	0.731
sync_0528	sync_1964	sync_0528	sync_1964	Carbohydrate kinase, FGGY family protein; Identified by match to protein family HMM PF00370.	Carboxysome shell protein CsoS3; Identified by match to protein family HMM TIGR02701.	0.733
sync_0528	sync_1965	sync_0528	sync_1965	Carbohydrate kinase, FGGY family protein; Identified by match to protein family HMM PF00370.	Hypothetical protein; Identified by Glimmer2; putative.	0.721
sync_0528	sync_1970	sync_0528	sync_1970	Carbohydrate kinase, FGGY family protein; Identified by match to protein family HMM PF00370.	Conserved hypothetical protein; Identified by similarity to GB:CAE19006.1.	0.701
sync_1946	cbbS	sync_1946	sync_1966	Possible pterin-4 alpha-carbinolamine dehydratase-like protein.	Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.	0.685
sync_1946	sync_0528	sync_1946	sync_0528	Possible pterin-4 alpha-carbinolamine dehydratase-like protein.	Carbohydrate kinase, FGGY family protein; Identified by match to protein family HMM PF00370.	0.737
sync_1946	sync_1962	sync_1946	sync_1962	Possible pterin-4 alpha-carbinolamine dehydratase-like protein.	Carboxysome peptide A; Identified by match to protein family HMM PF03319; match to protein family HMM TIGR02704.	0.800
sync_1946	sync_1963	sync_1946	sync_1963	Possible pterin-4 alpha-carbinolamine dehydratase-like protein.	Carboxysome peptide A; Identified by match to protein family HMM PF03319; match to protein family HMM TIGR02703.	0.790
sync_1946	sync_1964	sync_1946	sync_1964	Possible pterin-4 alpha-carbinolamine dehydratase-like protein.	Carboxysome shell protein CsoS3; Identified by match to protein family HMM TIGR02701.	0.790