STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1990Conserved hypothetical protein; Catalyzes the decarbonylation of fatty aldehydes to alkanes. (242 aa)    
Predicted Functional Partners:
sync_1989
Predicted dehydrogenase.
 
 
 
 0.999
sync_1143
Conserved hypothetical protein; Identified by similarity to GB:CAE07418.1.
  
     0.752
sync_1265
Ribonucleotide reductase (Class II); Identified by match to protein family HMM TIGR02505.
  
     0.749
sync_2026
Single-stranded DNA-binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621.
  
     0.733
cobO-1
cob(I)alamin adenosyltransferase; Identified by match to protein family HMM PF02572.
  
     0.731
sync_1720
Conserved hypothetical protein.
  
    0.699
sync_0470
Possible Pex protein.
  
     0.698
sync_1632
Conserved hypothetical protein.
  
     0.676
sync_1223
CAB/ELIP/HLIP family protein.
  
     0.643
sync_1991
Creatininase; Identified by match to protein family HMM PF02633.
       0.641
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.