STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_2011CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517. (459 aa)    
Predicted Functional Partners:
sync_2013
Dihydroorotase, putative.
  
    0.591
ftsI
Cell division protein FtsI/penicillin-binding protein 2; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717.
       0.578
cobC
Possible alpha-ribazole-5-P phosphatase; Identified by match to protein family HMM PF00300; Belongs to the phosphoglycerate mutase family.
  
    0.575
clpS-1
ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
 
    0.573
sync_2010
Conserved hypothetical protein; Identified by similarity to GB:CAE21425.1.
       0.545
sync_0765
DnaJ domain protein; Identified by match to protein family HMM PF00226.
  
     0.513
sync_2028
Conserved hypothetical protein; Identified by similarity to GB:CAE08294.1.
  
     0.489
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 1 subfamily.
  
    0.479
sync_1690
Conserved hypothetical protein; Identified by similarity to GB:CAE07636.1.
 
     0.461
sync_2296
Conserved hypothetical protein.
  
  
 0.426
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
Server load: low (24%) [HD]