sync_2045 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_2045

Putative cobalamin biosynthesis protein CobW; Identified by match to protein family HMM PF02492; match to protein family HMM PF07683. (352 aa)

Predicted Functional Partners:

sync_2044

0.779

map

0.583

sync_2046

0.548

sync_2043

0.545

rpsN

0.532

cbiE/cbiT

0.512

cbiG/cobJ

0.490

hisIE

0.463

rpmB

0.441

sync_2041

0.427

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cbiE/cbiT	cbiG/cobJ	sync_0810	sync_0391	Precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE/T subunits; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469.	cbiG protein/precorrin-3B C17-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466.	0.999
cbiE/cbiT	sync_2045	sync_0810	sync_2045	Precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE/T subunits; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469.	Putative cobalamin biosynthesis protein CobW; Identified by match to protein family HMM PF02492; match to protein family HMM PF07683.	0.512
cbiG/cobJ	cbiE/cbiT	sync_0391	sync_0810	cbiG protein/precorrin-3B C17-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466.	Precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE/T subunits; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469.	0.999
cbiG/cobJ	sync_2045	sync_0391	sync_2045	cbiG protein/precorrin-3B C17-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466.	Putative cobalamin biosynthesis protein CobW; Identified by match to protein family HMM PF02492; match to protein family HMM PF07683.	0.490
hisIE	map	sync_1899	sync_2170	Histidine biosynthesis bifunctional protein HisIE; Identified by similarity to SP:O34912; match to protein family HMM PF01502; match to protein family HMM PF01503; In the N-terminal section; belongs to the PRA-CH family.	Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.	0.924
hisIE	sync_2045	sync_1899	sync_2045	Histidine biosynthesis bifunctional protein HisIE; Identified by similarity to SP:O34912; match to protein family HMM PF01502; match to protein family HMM PF01503; In the N-terminal section; belongs to the PRA-CH family.	Putative cobalamin biosynthesis protein CobW; Identified by match to protein family HMM PF02492; match to protein family HMM PF07683.	0.463
map	hisIE	sync_2170	sync_1899	Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.	Histidine biosynthesis bifunctional protein HisIE; Identified by similarity to SP:O34912; match to protein family HMM PF01502; match to protein family HMM PF01503; In the N-terminal section; belongs to the PRA-CH family.	0.924
map	rpsN	sync_2170	sync_2089	Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.	Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.967
map	sync_2045	sync_2170	sync_2045	Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.	Putative cobalamin biosynthesis protein CobW; Identified by match to protein family HMM PF02492; match to protein family HMM PF07683.	0.583
rpmB	rpsN	sync_1399	sync_2089	Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.	Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.995
rpmB	sync_2045	sync_1399	sync_2045	Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.	Putative cobalamin biosynthesis protein CobW; Identified by match to protein family HMM PF02492; match to protein family HMM PF07683.	0.441
rpsN	map	sync_2089	sync_2170	Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.	0.967
rpsN	rpmB	sync_2089	sync_1399	Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.	0.995
rpsN	sync_2045	sync_2089	sync_2045	Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	Putative cobalamin biosynthesis protein CobW; Identified by match to protein family HMM PF02492; match to protein family HMM PF07683.	0.532
sync_2041	sync_2043	sync_2041	sync_2043	Uncharacterized membrane protein.	Hypothetical protein; Identified by Glimmer2; putative.	0.590
sync_2041	sync_2044	sync_2041	sync_2044	Uncharacterized membrane protein.	Putative pterin-4a-carbinolamine dehydratase; Identified by match to protein family HMM PF01329.	0.430
sync_2041	sync_2045	sync_2041	sync_2045	Uncharacterized membrane protein.	Putative cobalamin biosynthesis protein CobW; Identified by match to protein family HMM PF02492; match to protein family HMM PF07683.	0.427
sync_2043	sync_2041	sync_2043	sync_2041	Hypothetical protein; Identified by Glimmer2; putative.	Uncharacterized membrane protein.	0.590
sync_2043	sync_2044	sync_2043	sync_2044	Hypothetical protein; Identified by Glimmer2; putative.	Putative pterin-4a-carbinolamine dehydratase; Identified by match to protein family HMM PF01329.	0.549
sync_2043	sync_2045	sync_2043	sync_2045	Hypothetical protein; Identified by Glimmer2; putative.	Putative cobalamin biosynthesis protein CobW; Identified by match to protein family HMM PF02492; match to protein family HMM PF07683.	0.545