sync_2050 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

sync_2050

Putative membrane protein. (313 aa)

Predicted Functional Partners:

sync_2052

0.875

sync_2053

0.844

sync_2049

0.822

sync_2051

0.812

sync_0274

0.756

sync_1332

0.746

sync_0330

0.722

sync_1721

0.707

ndhL

0.706

sync_2257

0.703

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ndhL	sync_0274	sync_1912	sync_0274	Possible inorganic carbon transport protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	Conserved hypothetical protein.	0.498
ndhL	sync_0330	sync_1912	sync_0330	Possible inorganic carbon transport protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	Conserved hypothetical protein.	0.770
ndhL	sync_1721	sync_1912	sync_1721	Possible inorganic carbon transport protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	CheY-like domain containing protein.	0.459
ndhL	sync_2050	sync_1912	sync_2050	Possible inorganic carbon transport protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	Putative membrane protein.	0.706
ndhL	sync_2257	sync_1912	sync_2257	Possible inorganic carbon transport protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	Uncharacterized conserved membrane protein.	0.768
sync_0274	ndhL	sync_0274	sync_1912	Conserved hypothetical protein.	Possible inorganic carbon transport protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	0.498
sync_0274	sync_0330	sync_0274	sync_0330	Conserved hypothetical protein.	Conserved hypothetical protein.	0.713
sync_0274	sync_1332	sync_0274	sync_1332	Conserved hypothetical protein.	Conserved hypothetical protein.	0.604
sync_0274	sync_1721	sync_0274	sync_1721	Conserved hypothetical protein.	CheY-like domain containing protein.	0.727
sync_0274	sync_2050	sync_0274	sync_2050	Conserved hypothetical protein.	Putative membrane protein.	0.756
sync_0274	sync_2052	sync_0274	sync_2052	Conserved hypothetical protein.	Conserved hypothetical protein.	0.477
sync_0274	sync_2257	sync_0274	sync_2257	Conserved hypothetical protein.	Uncharacterized conserved membrane protein.	0.656
sync_0330	ndhL	sync_0330	sync_1912	Conserved hypothetical protein.	Possible inorganic carbon transport protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	0.770
sync_0330	sync_0274	sync_0330	sync_0274	Conserved hypothetical protein.	Conserved hypothetical protein.	0.713
sync_0330	sync_1332	sync_0330	sync_1332	Conserved hypothetical protein.	Conserved hypothetical protein.	0.539
sync_0330	sync_1721	sync_0330	sync_1721	Conserved hypothetical protein.	CheY-like domain containing protein.	0.725
sync_0330	sync_2050	sync_0330	sync_2050	Conserved hypothetical protein.	Putative membrane protein.	0.722
sync_0330	sync_2053	sync_0330	sync_2053	Conserved hypothetical protein.	Uncharacterized protein.	0.673
sync_0330	sync_2257	sync_0330	sync_2257	Conserved hypothetical protein.	Uncharacterized conserved membrane protein.	0.774
sync_1332	sync_0274	sync_1332	sync_0274	Conserved hypothetical protein.	Conserved hypothetical protein.	0.604