STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hli-2Lhc-like protein Lhl4. (48 aa)    
Predicted Functional Partners:
sync_0771
Uncharacterized protein.
  
     0.769
sync_1754
Putative membrane protein; Identified by similarity to GB:CAE20407.1.
  
     0.750
sync_2660
Conserved hypothetical protein; Identified by similarity to GB:CAE22238.1.
  
     0.733
kaiA
Circadian clock protein KaiA; Component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, it enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonizing the interaction between kaiA and kaiC. A kaiA dimer is sufficient to enhance kaiC he [...]
  
     0.666
sync_1538
Predicted HTH of cAMP family transcriptional regulator, putative; Identified by match to protein family HMM PF00325.
  
     0.656
petG
Cytochrome b6-f complex, subunit V; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. PetG is required for either the stability or assembly of the cytochrome b6-f complex.
  
     0.640
sync_2074
Putative high light inducible protein.
       0.625
sync_1805
Conserved hypothetical protein.
  
     0.615
sync_2668
Conserved hypothetical protein.
  
     0.613
sync_1825
Uncharacterized protein.
  
     0.581
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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